Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019310.1 Corchorus olitorius cultivar O-4 contig19343, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3767
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:2468 original size:11 final size:11

Alignment explanation


    Indices: 2452--2487  Score: 72
    Period size: 11  Copynumber: 3.3  Consensus size: 11

       2442 AGAAAATTGT

                       
       2452 TTGTTTTTGGA
          1 TTGTTTTTGGA

                       
       2463 TTGTTTTTGGA
          1 TTGTTTTTGGA

                       
       2474 TTGTTTTTGGA
          1 TTGTTTTTGGA

               
       2485 TTG
          1 TTG

       2488 ATTATTCATT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   25  1.00

ACGTcount: A:0.08, C:0.00, G:0.28, T:0.64


Consensus pattern (11 bp):   
TTGTTTTTGGA
Done.