Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019315.1 Corchorus olitorius cultivar O-4 contig19348, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3215
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39


Found at i:3087 original size:21 final size:21

Alignment explanation


    Indices: 3062--3104  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3052 GTTAAAAATA

                      *          
       3062 ATTTTAAATTTAAATTTATAT
          1 ATTTTAAATTCAAATTTATAT

                 *           *   
       3083 ATTTTGAATTCAAATTTTTAT
          1 ATTTTAAATTCAAATTTATAT

             
       3104 A
          1 A

       3105 AATAGATTTT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56


Consensus pattern (21 bp):   
ATTTTAAATTCAAATTTATAT
Done.