Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019316.1 Corchorus olitorius cultivar O-4 contig19349, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59160

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
716--764
21
2.3
21
82
6
55
14
28
16
40
1.87
3488--3638
76
2.0
76
80
7
173
16
29
29
24
1.97
17441--17489
21
2.3
21
79
6
55
18
6
8
67
1.37
18308--18337
13
2.3
13
94
0
51
56
3
16
23
1.55
21874--21979
39
2.8
39
88
7
164
49
4
15
31
1.65
23174--23229
25
2.2
25
87
6
78
16
14
23
46
1.83
26598--26686
28
3.2
28
68
6
83
56
3
16
23
1.56
26559--27331
54
14.7
54
86
5
1041
47
5
19
28
1.70
26572--26658
26
3.3
26
66
6
66
50
2
18
28
1.59
26709--26794
28
3.1
28
63
6
77
54
4
17
23
1.61
26786--26871
42
2.0
42
95
0
154
41
4
19
33
1.72
26834--27330
156
3.1
161
91
3
797
45
5
19
28
1.73
31606--31662
30
1.9
29
89
10
89
21
14
5
59
1.54
42259--42294
19
1.9
18
88
5
54
41
8
22
27
1.82
44568--44604
15
2.4
16
90
4
58
64
10
10
13
1.49
50705--50745
22
1.9
21
90
5
64
29
14
12
43
1.82
50748--50854
51
2.1
51
82
8
128
40
14
6
39
1.71
51216--51255
15
2.6
16
88
4
55
62
12
12
12
1.55
55691--55738
11
4.7
11
78
21
52
33
20
6
39
1.78

Tables:   1

The End!