Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019320.1 Corchorus olitorius cultivar O-4 contig19353, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3100
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34


Found at i:3050 original size:30 final size:31

Alignment explanation


    Indices: 3014--3072  Score: 93
    Period size: 30  Copynumber: 1.9  Consensus size: 31

       3004 GAATTGCTAA

                      * *                  
       3014 TCTAAACTAAGATTATAACTAAG-ATGACAC
          1 TCTAAACTAAAAGTATAACTAAGAATGACAC

                                         
       3044 TCTAAACTAAAAGTATAACTAAGAATGAC
          1 TCTAAACTAAAAGTATAACTAAGAATGAC

       3073 CAAAGAGAAC


Statistics
Matches: 26,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  30   21  0.81
  31    5  0.19

ACGTcount: A:0.49, C:0.15, G:0.10, T:0.25


Consensus pattern (31 bp):   
TCTAAACTAAAAGTATAACTAAGAATGACAC
Done.