Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019321.1 Corchorus olitorius cultivar O-4 contig19354, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1098
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25


Found at i:55 original size:25 final size:26

Alignment explanation


    Indices: 10--64  Score: 69
    Period size: 25  Copynumber: 2.1  Consensus size: 26

          1 TTCAAATCA

                                       
         10 AAAAGTAATTGAAAAGAAAGAAAAAAG
          1 AAAAGTAA-TGAAAAGAAAGAAAAAAG

                                     * 
         37 AAAAGTAA-GAAAATG-AAGAAAAAGG
          1 AAAAGTAATGAAAA-GAAAGAAAAAAG

               
         62 AAA
          1 AAA

         65 GAAAATGACT


Statistics
Matches: 26,  Mismatches: 1, Indels: 4
        0.84            0.03        0.13

Matches are distributed among these distances:
  25   17  0.65
  26    1  0.04
  27    8  0.31

ACGTcount: A:0.71, C:0.00, G:0.20, T:0.09


Consensus pattern (26 bp):   
AAAAGTAATGAAAAGAAAGAAAAAAG
Done.