Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019329.1 Corchorus olitorius cultivar O-4 contig19362, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3174
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28


Found at i:1441 original size:21 final size:21

Alignment explanation


    Indices: 1417--1471  Score: 76
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       1407 CGGCCATTCA

                           *      
       1417 CCGTGCCACCACCGGTTA-AGC
          1 CCGTGCCACCACCGGCTATA-C

                                 
       1438 CCGTGCCACCACCGGCTATAC
          1 CCGTGCCACCACCGGCTATAC

                    *    
       1459 CCGTGCCATCACC
          1 CCGTGCCACCACC

       1472 ATTCAGTGCC


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
  21   30  0.97
  22    1  0.03

ACGTcount: A:0.18, C:0.47, G:0.20, T:0.15


Consensus pattern (21 bp):   
CCGTGCCACCACCGGCTATAC
Done.