genome.fa.s19331.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019331.1 Corchorus olitorius cultivar O-4 contig19364, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47791

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480--522	20	2.2	20	86	0	59	13	23	18	44	1.86
1550--1608	30	1.9	31	86	3	84	45	5	22	27	1.73
3891--3922	2	16.0	2	100	0	64	0	50	0	50	1.00
5088--5131	21	2.1	21	83	8	54	29	2	2	65	1.16
5912--6005	45	2.2	43	90	7	147	38	22	5	34	1.77
15948--16028	40	2.0	40	92	0	135	40	19	13	25	1.89
16505--16558	16	3.4	16	85	10	67	57	1	1	38	1.20
16721--16757	19	1.9	19	88	0	56	75	2	5	16	1.10
17279--17336	4	15.0	4	80	10	59	50	20	1	27	1.58
17279--17337	19	3.0	21	78	11	63	49	20	1	28	1.59
20617--20682	21	3.2	20	70	16	62	48	10	9	31	1.69
20617--20699	42	2.0	42	95	0	148	46	14	7	31	1.71
20763--20879	56	2.0	57	91	4	191	41	2	23	32	1.68
24382--24414	15	2.1	17	88	11	52	63	33	3	0	1.10
26707--26736	15	1.9	16	93	6	53	43	0	3	53	1.17
27088--29227	337	6.4	332	75	12	1767	33	14	15	37	1.88
29638--31202	328	4.7	333	87	4	2071	31	15	16	37	1.89
29638--31235	659	2.4	660	85	4	1902	31	15	16	36	1.89
31601--31710	37	2.7	40	83	9	127	39	10	21	28	1.87
32113--32927	336	2.5	331	81	7	947	33	13	16	37	1.87
34545--34580	17	2.1	17	100	0	72	16	16	11	55	1.68
34858--34887	16	1.9	15	93	6	51	76	3	0	20	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34855--34908	24	2.2	25	83	3	65	70	5	3	20	1.23
38075--38126	26	2.0	26	100	0	104	26	26	15	30	1.96
38078--38313	117	2.0	118	94	0	420	27	26	13	32	1.93
43787--43886	18	5.3	18	71	18	62	50	1	2	47	1.19
43789--43861	2	39.5	2	74	15	50	49	1	0	49	1.09
43816--43899	18	5.2	16	73	14	59	51	1	2	45	1.22
46417--46458	13	3.2	13	74	12	50	9	42	42	4	1.58
47394--47467	28	2.7	27	78	14	80	28	21	9	40	1.84

Tables:   1

The End!