Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019335.1 Corchorus olitorius cultivar O-4 contig19368, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93040

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
929--1010
3
27.0
3
79
16
89
36
2
1
59
1.18
1463--1670
103
2.0
103
91
3
339
40
5
7
45
1.57
1729--1809
39
2.0
40
90
2
128
49
8
4
37
1.55
2642--2711
36
1.9
36
91
0
113
60
8
10
21
1.55
14835--14866
6
5.7
6
89
10
50
0
12
0
87
0.54
14835--14866
17
1.9
16
93
6
55
0
12
0
87
0.54
22369--22404
16
2.2
17
95
5
65
16
5
16
61
1.53
22637--22699
29
2.2
29
91
5
101
49
11
14
25
1.76
26643--26699
29
2.0
29
85
0
78
24
8
17
49
1.75
29787--29837
25
2.1
25
81
3
59
35
11
13
39
1.82
34987--35069
41
2.1
40
88
4
123
45
18
0
36
1.49
35741--36002
107
2.5
105
86
2
339
41
9
8
40
1.67
36423--36461
20
2.0
20
94
0
69
38
0
5
56
1.22
38024--38060
16
2.3
16
90
9
58
0
18
0
81
0.70
38027--38066
20
2.0
21
90
5
64
0
17
2
80
0.83
63554--63650
30
3.3
31
71
17
98
15
29
27
26
1.96
63559--63668
58
1.9
57
94
1
193
15
30
27
27
1.96
67547--67603
28
2.0
28
89
0
87
21
15
22
40
1.91
70287--70368
41
2.0
41
92
0
137
35
7
21
35
1.82
71509--71602
29
3.1
30
81
7
120
38
29
12
19
1.89
75310--75467
83
1.9
83
88
5
239
35
10
0
54
1.34
78383--78446
31
2.1
31
87
0
92
15
20
23
40
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78992--79086
5
19.2
5
84
10
106
0
0
15
84
0.63
78993--79085
1
93.0
1
71
0
69
0
0
13
86
0.58
78998--79085
16
5.7
16
94
2
119
0
0
13
86
0.57
79796--79843
21
2.1
23
85
11
64
37
14
10
37
1.81
83466--83535
29
2.4
28
81
9
86
17
24
15
42
1.88
89762--89807
2
23.0
2
90
0
74
45
0
4
50
1.21
90554--90825
137
2.0
141
84
2
363
51
1
9
37
1.45
91673--91771
32
3.1
32
82
4
110
37
11
13
38
1.80
92984--93026
20
2.2
20
86
0
59
13
23
18
44
1.86

Tables:   1

The End!