Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019337.1 Corchorus olitorius cultivar O-4 contig19370, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67723

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9260--9304
18
2.4
19
85
10
58
40
2
4
53
1.33
12116--12148
5
6.6
5
100
0
66
0
39
0
60
0.97
12474--12542
34
2.0
34
94
0
120
28
17
24
28
1.97
20285--20485
105
1.9
106
86
10
288
41
8
6
42
1.62
20946--20991
21
2.1
22
84
4
58
34
2
6
56
1.37
21609--21871
105
2.5
105
89
4
379
42
9
8
40
1.67
21907--21933
2
13.5
2
100
0
54
51
0
48
0
1.00
26883--27175
99
2.8
102
84
8
362
41
8
8
41
1.65
29132--29174
22
2.0
22
86
4
61
23
2
2
72
1.08
30631--30661
10
3.1
10
95
0
53
16
38
25
19
1.92
30952--31065
45
2.6
44
80
6
115
41
15
8
34
1.78
31132--31186
23
2.4
23
96
0
101
40
16
5
38
1.72
30908--31404
22
22.6
22
69
15
237
36
16
10
36
1.83
30908--32091
44
27.4
44
67
15
368
35
16
10
37
1.83
31510--31718
22
9.5
22
72
6
145
33
14
11
40
1.82
31864--31951
22
4.0
21
76
15
70
40
17
5
36
1.73
31941--32095
22
7.0
22
74
11
147
36
18
10
34
1.86
31864--32095
66
3.5
67
81
8
242
37
18
9
34
1.82
34371--34400
2
15.0
2
100
0
60
50
0
0
50
1.00
36408--36571
22
7.5
22
70
11
95
42
10
15
31
1.81
40817--40850
17
2.0
17
88
0
50
14
23
17
44
1.86
49660--50153
270
1.8
266
85
2
648
34
11
18
35
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52322--52402
2
41.5
2
85
4
112
48
1
2
48
1.23
53113--53143
2
16.0
2
93
6
55
51
0
0
48
1.00
53581--53612
12
2.8
12
86
13
50
62
6
0
31
1.20
54315--54598
149
1.9
149
96
0
523
16
14
31
37
1.89
56681--56729
25
2.0
25
95
0
89
34
18
30
16
1.93
57595--57643
25
2.0
25
91
0
80
34
16
32
16
1.91
66039--66073
17
2.1
17
94
0
61
0
31
51
17
1.45
67256--67302
12
3.6
14
82
8
55
55
10
0
34
1.35

Tables:   1

The End!