Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019340.1 Corchorus olitorius cultivar O-4 contig19373, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12220
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:11053 original size:2 final size:2

Alignment explanation


    Indices: 11046--11084  Score: 51
    Period size: 2  Copynumber: 19.0  Consensus size: 2

      11036 TTTGAAAGAT

                                  *              *                   
      11046 TA TA TA TA TA TA TA TC TA TA TA TA TC TA TA TA CTA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA

      11085 AGTCTAAACT


Statistics
Matches: 32,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
   2   30  0.94
   3    2  0.06

ACGTcount: A:0.44, C:0.08, G:0.00, T:0.49


Consensus pattern (2 bp):   
TA

Found at i:11446 original size:30 final size:27

Alignment explanation


    Indices: 11361--11443  Score: 121
    Period size: 30  Copynumber: 3.0  Consensus size: 27

      11351 GTTAATTTAG

                                       
      11361 ACTTATTATTATTATAATAATTATTAA
          1 ACTTATTATTATTATAATAATTATTAA

                              *           
      11388 ACTTATTATTAGTGGTATTATAATTATTAA
          1 ACTTATTATTA-T--TATAATAATTATTAA

                        *             
      11418 ACTTATTATTATAATAATAATTATTA
          1 ACTTATTATTATTATAATAATTATTA

      11444 TTAGTGGTAT


Statistics
Matches: 50,  Mismatches: 3, Indels: 6
        0.85            0.05        0.10

Matches are distributed among these distances:
  27   23  0.46
  28    1  0.02
  29    1  0.02
  30   25  0.50

ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51


Consensus pattern (27 bp):   
ACTTATTATTATTATAATAATTATTAA
Done.