Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019344.1 Corchorus olitorius cultivar O-4 contig19377, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24476

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1233--1263
15
2.1
15
93
0
53
38
6
32
22
1.80
1546--1588
20
2.1
21
91
4
70
53
9
13
23
1.69
1614--1716
43
2.4
44
88
1
145
36
8
12
41
1.74
1548--1716
22
7.9
21
74
7
101
40
8
13
37
1.75
1905--1929
13
1.9
13
100
0
50
28
0
0
72
0.86
3126--3289
87
1.9
88
89
1
258
33
9
15
41
1.79
5527--5569
21
2.0
22
86
4
61
34
25
30
9
1.87
16036--16086
22
2.5
20
81
9
57
45
0
43
11
1.40
17297--17345
6
8.2
6
100
0
98
32
16
0
51
1.45
17483--17528
18
2.6
17
82
6
56
50
2
0
47
1.13
17569--17649
39
2.0
40
92
2
137
50
8
3
37
1.51
17757--18166
202
2.0
203
96
1
761
35
10
8
44
1.70
18693--18738
18
2.6
17
82
6
56
50
2
0
47
1.13
18779--18859
39
2.0
40
92
2
137
50
8
3
37
1.51
18942--19350
202
2.0
202
97
0
766
36
10
8
44
1.71
19865--19934
36
1.9
36
88
0
104
58
8
11
21
1.59
20577--20686
58
1.9
58
90
0
175
34
18
13
33
1.90
22689--22718
12
2.5
12
94
0
51
50
0
6
43
1.28

Tables:   1

The End!