Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019345.1 Corchorus olitorius cultivar O-4 contig19378, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87101

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96--147
27
1.9
26
85
14
70
40
9
3
46
1.55
1486--1536
26
2.0
26
100
0
102
39
3
3
52
1.38
7755--7795
14
2.8
15
85
7
57
70
0
24
4
1.06
11068--11129
31
2.0
31
100
0
124
32
19
6
41
1.77
12605--12720
56
2.1
57
96
1
216
37
1
27
32
1.67
12904--13119
107
2.0
107
95
0
387
24
14
24
36
1.93
13198--13291
45
2.2
43
84
7
129
37
20
5
37
1.75
26526--26574
24
2.0
24
100
0
98
38
16
20
24
1.92
32417--32455
14
2.7
14
84
4
51
66
10
2
20
1.33
33750--33788
14
2.7
14
84
4
51
66
10
2
20
1.33
33853--33882
5
6.0
5
92
0
51
56
0
43
0
0.99
34108--34154
19
2.3
21
82
7
53
63
10
4
21
1.43
37120--37213
45
2.2
43
86
7
129
38
20
5
36
1.75
38114--38201
45
2.0
44
86
6
126
38
20
5
35
1.76
41237--41273
2
18.5
2
88
0
56
45
0
0
54
1.00
43545--43639
49
1.9
49
82
0
118
44
15
9
30
1.79
59561--59763
113
1.8
108
83
5
262
40
10
7
40
1.69
60594--60702
54
2.0
54
98
0
209
37
20
11
30
1.88
60878--60916
19
2.1
19
85
0
51
43
15
23
17
1.87

Tables:   1

The End!