genome.fa.s19349.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019349.1 Corchorus olitorius cultivar O-4 contig19382, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146902

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7005--7058	21	2.5	21	93	6	90	59	24	1	14	1.46
28358--28386	2	14.5	2	100	0	58	51	0	0	48	1.00
33262--33300	19	2.1	19	100	0	78	25	15	28	30	1.96
42790--43417	285	2.2	285	98	0	1220	39	18	18	23	1.92
44468--44497	3	10.0	3	100	0	60	66	33	0	0	0.92
57418--57515	30	3.2	30	94	4	160	25	19	12	42	1.86
59839--59933	45	2.2	43	87	7	140	40	21	5	33	1.75
60895--60930	12	3.2	12	77	22	51	58	0	0	41	0.98
68213--68292	41	2.0	41	95	5	144	21	8	25	45	1.80
69643--69670	5	5.6	5	100	0	56	57	21	0	21	1.41
76839--76872	13	2.6	13	95	0	59	26	8	17	47	1.77
87151--87208	19	2.9	19	84	5	71	29	20	12	37	1.89
87480--87523	17	2.6	17	100	0	88	29	18	11	40	1.85
91139--91288	22	6.9	22	71	9	94	37	12	9	40	1.76
91183--91289	44	2.4	45	83	6	130	38	12	9	40	1.75
91139--91264	66	1.9	65	82	7	157	38	10	9	41	1.72
91140--91310	22	7.9	21	71	14	73	35	13	9	41	1.77
108650--108707	27	2.1	27	83	0	71	31	32	1	34	1.68
115060--115153	45	2.2	44	86	7	140	37	21	6	35	1.79
116699--116757	31	1.9	31	82	6	75	28	15	11	44	1.82
138264--138354	42	2.2	42	94	2	157	38	21	5	34	1.77
139108--139156	18	2.8	17	84	9	62	36	4	12	46	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144480--144509	14	2.1	14	100	0	60	30	16	6	46	1.73
144668--144883	105	2.1	103	97	1	405	20	14	15	49	1.79
145427--145553	62	2.0	62	98	0	245	56	10	16	16	1.66
145492--146240	292	2.5	293	89	4	1136	43	16	16	23	1.87
146395--146430	19	1.9	18	88	5	54	30	22	8	38	1.83

Tables:   1

The End!