Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019354.1 Corchorus olitorius cultivar O-4 contig19387, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62602

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
883--912
15
2.0
15
93
0
51
43
26
10
20
1.83
7837--7896
17
3.6
16
77
4
57
36
16
15
31
1.90
11618--11899
104
2.7
104
88
2
413
43
7
9
40
1.64
12648--12698
22
2.3
22
96
0
93
21
56
11
9
1.63
15287--15316
2
15.0
2
100
0
60
50
0
0
50
1.00
18167--18236
36
1.9
36
91
0
113
21
10
8
60
1.55
19120--19200
39
2.0
40
92
2
137
38
3
8
49
1.51
24447--24539
31
3.0
32
83
9
111
37
24
18
19
1.94
32578--32619
21
2.0
20
86
4
57
59
2
2
35
1.23
36868--36893
2
13.0
2
100
0
52
50
0
0
50
1.00
37232--37302
33
2.2
33
94
0
124
66
2
12
18
1.37
40869--40951
27
3.1
27
77
6
96
37
10
45
6
1.64
44712--44770
30
2.0
30
93
0
100
23
5
13
57
1.56
45808--45859
27
1.9
27
96
0
95
7
51
7
32
1.59
46896--46950
20
2.8
20
77
2
67
30
10
34
23
1.89
55650--55926
107
2.6
105
82
7
341
42
9
7
40
1.66
57524--57818
149
2.0
148
87
0
428
29
15
10
44
1.80
59162--59186
13
1.9
13
100
0
50
76
0
0
24
0.80
59715--59769
26
2.1
26
100
0
110
36
23
18
21
1.95
62535--62580
24
1.9
24
86
0
65
60
17
4
17
1.51

Tables:   1

The End!