Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019360.1 Corchorus olitorius cultivar O-4 contig19393, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40122

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2481--2592
37
3.1
37
70
12
113
40
11
4
43
1.61
5286--5315
1
30.0
1
100
0
60
0
0
0
100
0.00
10728--10787
31
2.0
30
86
3
84
46
5
21
26
1.72
11878--11920
16
2.8
15
77
19
52
9
23
34
32
1.87
12043--12099
25
2.4
24
85
5
71
29
5
3
61
1.35
12354--12387
17
2.0
17
94
0
59
44
5
0
50
1.26
13006--13032
12
2.2
12
100
0
54
40
7
40
11
1.69
13267--13371
48
2.2
48
98
0
201
39
9
31
20
1.84
14538--14589
25
2.1
25
85
0
68
34
17
7
40
1.78
18143--18188
17
2.7
17
100
0
92
50
15
0
34
1.44
18914--19015
49
2.1
50
87
5
145
49
4
20
25
1.69
22660--22709
19
2.5
20
81
15
59
38
24
6
32
1.79
23000--23043
20
2.2
20
91
0
70
31
18
18
31
1.95
26423--26448
13
2.0
13
100
0
52
38
15
23
23
1.92
27560--27597
10
3.7
10
89
3
58
31
5
21
42
1.75
27557--27597
20
2.0
21
95
4
75
31
4
19
43
1.72
28294--28334
21
2.0
21
95
0
73
29
0
14
56
1.39
29013--29058
20
2.4
19
82
10
58
19
32
0
47
1.50
29119--29151
15
2.2
15
89
10
50
0
36
6
57
1.23
39908--39962
24
2.4
22
82
11
65
60
3
5
30
1.37

Tables:   1

The End!