Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019361.1 Corchorus olitorius cultivar O-4 contig19394, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94924

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1080--1126
22
2.1
22
84
7
60
61
2
12
23
1.42
1002--1187
93
2.0
94
91
1
302
52
2
12
32
1.53
2974--3081
54
2.0
54
100
0
216
38
14
20
25
1.91
6092--6126
6
6.0
6
93
6
54
54
11
17
17
1.71
9760--9815
15
3.7
15
73
17
53
32
5
32
30
1.80
9831--9922
45
2.0
45
95
0
166
34
16
31
17
1.92
9895--9945
18
2.6
19
84
12
68
27
11
39
21
1.88
9929--10061
44
2.9
46
88
6
209
36
12
29
22
1.90
12761--12795
2
18.0
2
94
5
63
51
0
0
48
1.00
13559--13603
2
23.5
2
78
17
51
51
4
0
44
1.21
13559--13605
18
2.4
21
86
13
66
51
6
0
42
1.27
13751--13806
29
1.9
29
96
0
103
21
3
30
44
1.69
16441--16483
2
21.5
2
100
0
86
48
0
0
51
1.00
18347--18441
32
3.0
32
87
0
127
40
33
7
18
1.79
18363--18419
17
3.5
17
73
9
64
40
36
7
15
1.75
20158--20298
45
3.2
45
86
4
200
34
5
20
39
1.76
26078--26127
25
2.0
25
100
0
100
36
4
16
44
1.66
26441--26480
21
2.0
20
85
5
53
12
2
25
60
1.45
26799--27060
107
2.5
105
87
7
369
42
7
9
40
1.65
27366--27542
89
2.0
88
97
1
336
41
16
12
29
1.85
28117--28196
40
2.0
40
87
4
117
35
12
3
48
1.59
28438--28480
2
21.5
2
86
9
61
46
2
2
48
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28437--28480
19
2.3
18
85
11
61
45
2
2
50
1.27
28949--29006
14
4.1
14
77
4
55
48
1
3
46
1.29
30028--30083
27
2.1
26
87
9
78
41
12
1
44
1.53
32917--33102
22
8.5
22
72
12
125
40
9
14
35
1.79
32917--33058
21
6.5
23
74
11
97
40
9
15
34
1.80
43514--43579
32
2.1
32
94
0
114
50
24
1
24
1.58
54749--54805
3
19.0
3
80
10
55
61
3
0
35
1.13
54759--54808
26
1.9
26
87
0
73
62
6
0
32
1.20
91294--91346
26
2.0
26
92
7
90
32
1
20
45
1.62
94559--94584
12
2.2
12
100
0
52
34
19
7
38
1.80

Tables:   1

The End!