Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019364.1 Corchorus olitorius cultivar O-4 contig19397, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51960

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
721--773
26
2.0
26
100
0
106
32
3
18
45
1.68
3491--3548
29
2.0
30
83
10
75
37
10
8
43
1.70
4815--4862
18
2.7
18
93
0
78
31
18
10
39
1.85
4966--5017
26
2.0
26
92
7
88
30
1
21
46
1.62
27975--28009
2
17.5
2
100
0
70
48
0
0
51
1.00
32461--32522
31
2.0
31
96
0
115
29
14
9
46
1.76
40152--40192
11
3.7
11
87
6
57
80
14
4
0
0.87
44148--44315
77
2.3
70
88
7
237
43
12
10
33
1.76
45225--45255
15
2.1
15
93
0
53
22
19
6
51
1.69
49868--49906
14
3.0
13
82
10
53
51
0
0
48
1.00
49868--49911
13
3.2
14
84
9
56
50
2
0
47
1.13
50156--50194
20
2.0
20
85
10
53
28
2
5
64
1.28
50361--51537
44
27.3
43
67
17
214
37
9
16
36
1.81
50357--50579
22
10.0
22
72
10
152
34
9
17
38
1.82
50592--51537
22
42.8
22
66
19
189
37
9
16
36
1.81
51115--51216
41
2.4
41
80
11
109
39
8
12
39
1.75
51200--51314
60
1.9
61
85
5
162
40
7
15
36
1.77
51258--51387
23
5.7
23
90
5
160
37
8
16
37
1.79
51627--51680
22
2.5
22
87
6
74
42
9
16
31
1.80
51786--51827
2
21.0
2
100
0
84
50
0
0
50
1.00

Tables:   1

The End!