Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019365.1 Corchorus olitorius cultivar O-4 contig19398, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31682

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3639--3699
25
2.5
25
89
2
88
50
6
3
39
1.45
5242--5266
13
1.9
13
100
0
50
44
0
0
56
0.99
6374--6411
20
1.9
20
88
0
58
55
15
0
28
1.41
6630--6691
29
2.1
30
90
3
99
41
9
20
27
1.84
7114--7489
187
2.0
186
95
2
675
43
13
12
30
1.81
8456--8505
26
1.9
26
92
8
84
32
4
18
46
1.67
12204--12235
5
6.8
5
86
13
50
21
18
0
59
1.38
12210--12259
8
6.4
8
80
17
52
24
18
0
58
1.40
12204--12243
13
2.9
13
88
7
53
22
17
0
60
1.37
12258--12317
22
2.6
22
92
5
93
45
25
0
30
1.54
12270--12313
11
4.0
11
82
11
63
45
27
0
27
1.54
12260--12303
7
6.1
7
85
15
63
45
27
0
27
1.54
12551--12598
20
2.6
19
81
12
55
41
0
4
54
1.20
14864--14918
17
3.8
16
67
32
52
49
38
9
3
1.52
14855--14913
25
2.4
25
100
0
118
54
35
6
3
1.44
15373--15497
49
2.7
47
88
6
182
35
22
7
35
1.82
18913--18940
13
2.2
13
100
0
56
7
7
14
71
1.29
21008--21103
49
2.0
49
91
0
156
40
7
10
41
1.67
21459--21538
29
2.8
29
90
7
135
36
27
13
22
1.92
21779--21815
18
2.1
18
94
0
65
43
10
2
43
1.53

Tables:   1

The End!