genome.fa.s19366.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019366.1 Corchorus olitorius cultivar O-4 contig19399, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121605

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4341--4370	15	1.9	16	93	6	53	53	3	0	43	1.17
6289--8446	337	6.5	333	76	11	1812	33	13	16	37	1.87
12154--12208	27	2.0	27	89	0	83	45	7	20	27	1.77
15357--15392	13	2.6	14	86	8	56	36	5	16	41	1.72
16182--16207	2	13.0	2	100	0	52	50	0	0	50	1.00
20002--20054	22	2.3	24	77	12	65	28	16	9	45	1.79
20009--20055	22	2.1	22	88	0	67	25	21	6	46	1.74
22931--22967	5	7.2	5	96	3	65	43	0	0	56	0.99
24522--24546	13	1.9	13	100	0	50	72	12	16	0	1.13
25339--25535	22	9.1	22	69	12	104	43	7	13	36	1.72
25433--25535	43	2.4	44	85	1	127	40	6	10	41	1.66
25594--25643	2	24.0	2	93	4	82	48	2	2	48	1.24
25589--25641	18	3.1	18	94	5	92	47	3	3	45	1.39
26506--26558	26	2.0	26	92	7	90	32	1	20	45	1.62
27259--27368	55	2.0	55	98	0	211	44	7	20	28	1.77
28157--28266	55	2.0	55	98	0	211	44	7	20	28	1.77
28312--29635	660	2.0	662	95	1	2365	28	16	17	37	1.92
29839--30101	132	2.0	131	93	0	454	43	11	9	34	1.75
35606--35749	72	2.0	72	97	0	270	30	13	44	11	1.79
36609--36794	22	8.5	22	75	14	115	34	14	9	40	1.79
36609--36712	43	2.4	44	81	1	129	38	11	10	39	1.76
36733--36813	21	3.9	20	84	7	83	25	20	8	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36748--36819	22	3.4	22	80	3	67	23	18	9	48	1.77
37053--37138	45	1.9	45	90	0	136	31	13	11	43	1.81
44490--44551	27	2.3	26	81	15	65	43	1	9	45	1.46
44603--44632	2	14.5	2	93	6	51	46	0	3	50	1.18
49631--49729	51	1.9	51	95	0	180	32	14	22	31	1.93
50713--50771	31	1.9	31	82	6	75	11	18	37	32	1.87
53043--53097	28	2.0	28	85	7	76	32	3	5	58	1.38
53800--53906	31	3.5	30	71	14	94	33	18	21	26	1.96
53804--53929	60	2.1	60	90	0	198	34	18	19	27	1.95
54028--54191	31	5.4	31	81	11	221	23	18	18	39	1.93
54029--54256	60	3.8	59	85	8	255	25	18	17	37	1.93
54028--54255	91	2.5	90	76	14	225	25	18	18	37	1.94
55123--55208	29	2.9	30	79	11	79	40	22	12	24	1.89
55154--55210	29	1.9	30	89	3	89	43	17	14	24	1.86
55334--55371	20	2.0	20	89	5	60	26	0	15	57	1.38
56549--56618	22	3.2	21	73	18	63	28	21	11	38	1.88
56518--56618	43	2.3	43	79	5	105	31	21	8	37	1.85
56516--56618	44	2.4	44	78	4	111	31	21	9	37	1.86
56650--56834	22	8.5	22	69	13	98	30	15	12	42	1.83
56649--56779	43	3.1	42	69	16	115	30	13	12	42	1.82
56773--56895	22	5.6	22	69	11	63	34	18	12	34	1.88
56936--56978	22	2.0	22	85	0	59	32	23	9	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57045--57610	22	25.5	22	68	12	174	30	20	12	36	1.90
57154--57379	71	3.4	66	75	12	210	28	20	12	38	1.89
60487--60548	32	2.0	31	87	3	88	32	25	27	14	1.95
67180--67341	88	1.9	87	83	7	213	35	7	19	37	1.80
69320--69346	13	2.1	13	100	0	54	25	7	7	59	1.51
69233--69672	221	2.0	209	92	5	718	29	8	12	49	1.70
71145--71189	22	2.0	22	95	0	81	31	15	13	40	1.86
71449--71499	24	2.1	24	100	0	102	19	19	17	43	1.89
72099--72147	21	2.3	21	78	3	53	40	26	14	18	1.89
72482--72979	219	2.3	222	97	1	939	36	10	15	37	1.82
85472--85509	19	2.0	19	100	0	76	42	26	5	26	1.76
86019--86231	107	2.0	106	87	2	311	30	5	14	49	1.66
90446--90574	65	2.0	64	84	4	170	25	29	24	20	1.99
95266--95515	121	2.0	127	88	7	377	49	1	11	38	1.48
99000--99030	12	2.6	12	94	0	53	0	12	32	54	1.38
102224--102270	23	2.0	23	100	0	94	46	12	17	23	1.82
103628--103697	30	2.3	31	76	16	74	28	14	5	51	1.65
108932--109091	22	7.4	22	75	8	114	39	9	15	36	1.79
108931--108993	21	3.0	21	79	9	74	46	9	17	26	1.79
109443--109475	17	1.9	17	100	0	66	36	18	12	33	1.88
118677--118770	45	2.2	42	86	7	136	35	6	21	37	1.79
119609--120077	237	2.0	234	95	2	841	33	13	9	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120108--120141	2	17.0	2	93	0	59	47	2	0	50	1.16
120233--120270	19	2.0	20	89	5	60	50	18	0	31	1.47

Tables:   1

The End!