Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019368.1 Corchorus olitorius cultivar O-4 contig19401, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19617
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32


Found at i:3597 original size:21 final size:21

Alignment explanation


    Indices: 3571--3612  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3561 AGTGTGTGGA

                                 
       3571 GCATAGCCTTCCTAGTCTCCT
          1 GCATAGCCTTCCTAGTCTCCT

                                 
       3592 GCATAGCCTTCCTAGTCTCCT
          1 GCATAGCCTTCCTAGTCTCCT

       3613 TGACCGAACT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.14, C:0.38, G:0.14, T:0.33


Consensus pattern (21 bp):   
GCATAGCCTTCCTAGTCTCCT
Done.