Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019369.1 Corchorus olitorius cultivar O-4 contig19402, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106105

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15293--15323
9
3.4
9
95
0
53
32
45
12
9
1.75
22058--22538
170
2.8
166
85
7
626
33
7
23
35
1.84
26993--27055
21
3.1
20
81
9
74
34
12
20
31
1.90
30457--30490
2
17.0
2
100
0
68
50
0
50
0
1.00
33045--33093
25
1.9
26
83
4
64
63
18
0
18
1.32
34101--34160
25
2.4
25
94
2
102
31
11
16
40
1.85
34129--34317
101
1.9
101
84
2
254
31
15
15
38
1.88
38568--38603
9
4.0
9
100
0
72
33
11
11
44
1.75
38911--38948
11
3.5
11
85
10
51
57
2
0
39
1.12
41118--41173
29
1.9
29
88
0
85
41
16
12
30
1.85
41817--41860
2
21.5
2
95
4
79
50
0
2
47
1.13
43015--43055
2
20.5
2
100
0
82
51
0
0
48
1.00
46776--46824
22
2.2
22
82
7
55
48
8
4
38
1.52
52327--52359
15
2.2
15
89
10
50
81
0
6
12
0.85
58106--58240
69
2.0
69
89
2
209
26
14
11
46
1.79
58361--58398
2
19.0
2
100
0
76
50
50
0
0
1.00
59658--59721
30
2.1
30
85
5
85
42
9
12
35
1.75
76981--77056
24
3.2
24
80
0
80
23
21
18
36
1.95
79667--79722
29
1.9
29
89
7
87
46
14
8
30
1.75
81494--81563
25
2.7
25
82
10
70
30
24
7
38
1.82
83094--83217
52
2.4
52
100
0
248
37
12
10
39
1.77
88608--88634
7
3.9
7
100
0
54
44
11
0
44
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89304--89539
56
3.9
60
86
8
318
48
6
9
35
1.62
89319--89539
123
1.8
117
87
9
329
50
6
9
34
1.59
98481--98515
11
3.2
11
87
0
52
80
14
2
2
0.95
100201--100480
107
2.7
103
86
4
364
41
7
9
42
1.65
100216--100515
107
2.8
107
84
5
319
40
8
9
42
1.66
100611--100644
17
2.0
17
100
0
68
35
5
47
11
1.65
101504--101532
2
14.5
2
100
0
58
51
0
0
48
1.00
102226--102268
20
2.1
21
86
4
61
20
18
20
39
1.93
102256--102338
42
2.0
43
85
7
116
34
21
18
25
1.96
102866--102979
56
2.0
56
94
0
201
34
22
1
41
1.65
103045--103125
42
1.9
42
92
5
137
32
7
13
46
1.71

Tables:   1

The End!