Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001937.1 Corchorus olitorius cultivar O-4 contig01937, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 712

Length: 1188
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.37


Found at i:881 original size:6 final size:6

Alignment explanation


    Indices: 870--902  Score: 66
    Period size: 6  Copynumber: 5.5  Consensus size: 6

        860 GCTTTAACAA

                                                  
        870 TATATC TATATC TATATC TATATC TATATC TAT
          1 TATATC TATATC TATATC TATATC TATATC TAT

        903 CTTACTACTA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52


Consensus pattern (6 bp):   
TATATC

Found at i:1093 original size:26 final size:28

Alignment explanation


    Indices: 1060--1119  Score: 79
    Period size: 31  Copynumber: 2.1  Consensus size: 28

       1050 ATCCAATATT

                                        
       1060 TTATTTTTTT-A-AATTATGAAAAGATA
          1 TTATTTTTTTGAGAATTATGAAAAGATA

                                           
       1086 TTATTTTTTTGAGGTTAATTATGAAAAGATA
          1 TTATTTTTTTGA-G--AATTATGAAAAGATA

               
       1117 TTA
          1 TTA

       1120 ATAATCTACT


Statistics
Matches: 29,  Mismatches: 0, Indels: 5
        0.85            0.00        0.15

Matches are distributed among these distances:
  26   10  0.34
  27    1  0.03
  31   18  0.62

ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50


Consensus pattern (28 bp):   
TTATTTTTTTGAGAATTATGAAAAGATA
Done.