Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019370.1 Corchorus olitorius cultivar O-4 contig19403, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2014
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:1597 original size:22 final size:22

Alignment explanation


    Indices: 1557--1604  Score: 62
    Period size: 22  Copynumber: 2.2  Consensus size: 22

       1547 CTTGTTATCG

                                * 
       1557 ACTTTGCTTCTTTAAGTCGATA
          1 ACTTTGCTTCTTTAAGTCGACA

                           *       
       1579 ACTTTGCTTCCTTT-GGTCGACA
          1 ACTTTGCTT-CTTTAAGTCGACA

                
       1601 ACTT
          1 ACTT

       1605 CCTAGTTGAC


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  22   19  0.83
  23    4  0.17

ACGTcount: A:0.19, C:0.23, G:0.15, T:0.44


Consensus pattern (22 bp):   
ACTTTGCTTCTTTAAGTCGACA
Done.