Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019373.1 Corchorus olitorius cultivar O-4 contig19406, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50242

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
545--668
62
2.0
62
98
0
239
21
17
14
45
1.84
1160--1193
2
17.0
2
100
0
68
50
0
0
50
1.00
1928--1988
30
2.0
30
93
0
104
36
18
14
31
1.91
2969--3036
30
2.3
30
87
2
84
33
20
14
30
1.93
3429--3487
30
1.9
31
82
3
75
30
10
6
52
1.61
4203--4312
54
2.0
54
96
0
202
33
15
10
40
1.80
7778--7817
21
1.9
21
94
0
71
42
10
30
17
1.82
7947--7988
21
2.0
21
85
4
57
28
19
14
38
1.90
8459--8550
22
4.2
22
64
8
62
33
23
8
33
1.86
8416--8615
65
3.0
64
78
4
175
33
20
9
37
1.85
8416--8615
66
3.0
63
75
7
202
33
20
9
37
1.85
14892--14952
15
4.0
15
81
10
79
32
11
1
54
1.46
14891--14952
31
2.1
31
87
6
92
33
11
1
53
1.46
15383--15407
2
12.5
2
100
0
50
52
0
0
48
1.00
24456--24500
22
2.0
22
95
0
81
11
33
0
55
1.35
26120--26160
21
2.0
20
95
4
73
19
2
19
58
1.50
26437--26491
27
2.0
27
100
0
110
23
18
21
36
1.95
26696--26775
39
2.0
40
95
2
144
43
13
11
31
1.79
32626--32679
21
2.5
20
80
17
56
12
11
29
46
1.77
32660--32746
25
3.4
25
64
17
70
17
13
21
47
1.82
32658--32750
30
3.4
30
63
22
85
17
13
21
47
1.82
32662--32766
52
2.0
53
98
1
203
15
15
19
50
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33796--33837
19
2.2
20
84
16
54
7
23
2
66
1.28
35100--35140
11
3.6
11
80
6
55
9
7
21
60
1.52
35099--35170
23
2.9
24
86
12
101
12
8
18
61
1.55
35090--35169
27
3.1
27
82
14
123
15
8
16
60
1.59
36158--36230
36
2.0
37
97
2
139
35
5
24
34
1.79
39007--39036
2
15.0
2
92
0
51
46
0
0
53
1.00
41242--41283
22
2.0
22
85
4
59
40
11
0
47
1.40
46602--46635
17
2.0
17
88
11
52
55
2
23
17
1.55
47532--47592
28
2.2
28
87
0
86
68
6
8
16
1.35

Tables:   1

The End!