Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019375.1 Corchorus olitorius cultivar O-4 contig19408, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35982

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1391--1505
58
2.0
58
87
3
169
33
14
19
32
1.92
2769--2838
36
1.9
36
97
0
131
22
8
7
61
1.49
3224--3462
120
2.0
120
99
0
469
36
12
11
39
1.80
3738--3804
21
3.2
21
66
16
57
34
1
11
52
1.48
4146--4176
1
31.0
1
100
0
62
100
0
0
0
0.00
4711--4775
32
2.0
32
100
0
130
44
9
18
27
1.80
16223--16264
21
2.0
21
85
0
57
33
2
33
30
1.71
16355--16395
19
2.2
19
95
0
73
29
0
0
70
0.87
17638--17672
18
1.9
18
88
0
52
51
2
2
42
1.31
17752--17780
10
2.9
10
100
0
58
62
17
10
10
1.54
25990--26026
18
2.1
18
89
0
56
21
8
24
45
1.78
28190--28248
28
2.1
27
90
9
100
49
3
6
40
1.46
28226--28268
20
2.1
21
95
4
79
46
4
9
39
1.57
31799--32180
90
4.0
90
73
17
320
27
36
17
18
1.94
31885--32177
105
2.9
98
80
7
311
28
35
16
18
1.93
31751--32198
204
2.3
192
80
6
515
28
35
16
18
1.93
32555--32580
6
4.3
6
100
0
52
34
15
15
34
1.89
33800--33878
40
2.0
41
97
2
151
40
12
10
36
1.77
34537--34610
22
3.4
21
79
7
85
39
10
8
41
1.70
34581--34639
29
2.0
29
86
0
82
44
8
8
38
1.65
34610--34673
22
2.9
21
77
13
65
39
12
7
40
1.72
34864--35460
298
2.0
298
97
0
1140
33
23
14
28
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35920--35947
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!