Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019376.1 Corchorus olitorius cultivar O-4 contig19409, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23851
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34


Found at i:1568 original size:15 final size:15

Alignment explanation


    Indices: 1548--1580  Score: 57
    Period size: 15  Copynumber: 2.2  Consensus size: 15

       1538 GACATTAGTT

                           
       1548 GGAGATACCCCGGAA
          1 GGAGATACCCCGGAA

                    *      
       1563 GGAGATACGCCGGAA
          1 GGAGATACCCCGGAA

               
       1578 GGA
          1 GGA

       1581 CATCATGTAT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.33, C:0.21, G:0.39, T:0.06


Consensus pattern (15 bp):   
GGAGATACCCCGGAA

Found at i:12685 original size:36 final size:36

Alignment explanation


    Indices: 12621--12693  Score: 92
    Period size: 36  Copynumber: 2.0  Consensus size: 36

      12611 CCTAGTATAG

                            *  *                
      12621 TGCAGAATGCAGGTGACTCGTCTAATGCGAGTACAT
          1 TGCAGAATGCAGGTGAATCATCTAATGCGAGTACAT

                      *          * *        *   
      12657 TGCAGAATGCTGGTGAATCATTTGATGCGAGTGCAT
          1 TGCAGAATGCAGGTGAATCATCTAATGCGAGTACAT

             
      12693 T
          1 T

      12694 TTCTGGTGTA


Statistics
Matches: 31,  Mismatches: 6, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  36   31  1.00

ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29


Consensus pattern (36 bp):   
TGCAGAATGCAGGTGAATCATCTAATGCGAGTACAT
Done.