Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019381.1 Corchorus olitorius cultivar O-4 contig19414, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2654
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32


Found at i:227 original size:30 final size:29

Alignment explanation


    Indices: 159--233  Score: 96
    Period size: 29  Copynumber: 2.6  Consensus size: 29

        149 ACTTGTAGCG

                   *       **            
        159 TTTGGACGTTTTGCCTTCTGAACTTCAAT
          1 TTTGGACATTTTGCCCCCTGAACTTCAAT

                                  *  *   
        188 TTTGGACATTTTGCCCCCTGAATTTTAAT
          1 TTTGGACATTTTGCCCCCTGAACTTCAAT

                             
        217 TTTGGGACATTTTGCCC
          1 TTT-GGACATTTTGCCC

        234 TCTCATACTA


Statistics
Matches: 40,  Mismatches: 5, Indels: 1
        0.87            0.11        0.02

Matches are distributed among these distances:
  29   27  0.68
  30   13  0.32

ACGTcount: A:0.17, C:0.21, G:0.17, T:0.44


Consensus pattern (29 bp):   
TTTGGACATTTTGCCCCCTGAACTTCAAT
Done.