Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019383.1 Corchorus olitorius cultivar O-4 contig19416, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131948

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--87
3
29.7
3
77
4
88
34
0
9
56
1.31
4--102
6
16.5
6
91
8
130
34
0
11
54
1.36
4233--4412
90
2.0
92
91
3
292
36
25
7
31
1.84
7829--7860
13
2.4
14
85
15
50
25
3
0
71
1.00
10151--10227
39
2.0
39
97
0
145
18
6
27
48
1.72
27675--27706
16
2.0
16
100
0
64
31
0
12
56
1.37
38256--38293
20
1.9
20
94
0
67
52
13
21
13
1.73
49953--50244
146
2.0
145
91
2
469
21
32
25
19
1.97
50301--50557
129
2.0
127
93
1
442
29
21
22
26
1.99
53651--53845
100
2.0
99
89
3
302
40
12
14
32
1.84
53911--53949
20
1.9
20
84
5
51
41
7
17
33
1.79
57370--57871
276
1.8
272
87
1
752
36
18
11
33
1.87
59777--59825
21
2.5
20
87
9
66
57
0
4
38
1.18
59777--59820
15
3.0
14
80
9
52
56
0
2
40
1.11
64223--64261
14
2.9
13
80
3
51
53
2
2
41
1.28
64247--64503
124
2.0
127
90
6
412
49
1
10
38
1.49
64862--64904
22
2.0
22
86
9
61
32
30
6
30
1.84
80603--80681
27
3.2
27
63
26
75
44
30
1
24
1.62
80584--80702
46
2.6
46
97
0
220
42
26
3
26
1.71
80577--80674
19
4.6
21
70
22
78
43
30
2
23
1.65
91709--91735
6
4.5
6
100
0
54
51
18
14
14
1.76
105672--105710
20
2.0
20
100
0
78
25
28
10
35
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109905--110002
33
3.0
33
100
0
196
44
9
3
42
1.51
119218--119267
24
2.1
24
88
0
73
38
16
18
28
1.91
126521--126600
40
2.0
40
92
4
135
15
28
8
47
1.75
131284--131641
120
3.0
120
95
1
623
25
30
14
29
1.95
131536--131582
24
2.0
24
95
0
85
31
36
8
23
1.85

Tables:   1

The End!