Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019384.1 Corchorus olitorius cultivar O-4 contig19417, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41010
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Found at i:4748 original size:480 final size:482
Alignment explanation
Indices: 3520--5670 Score: 3093
Period size: 480 Copynumber: 4.4 Consensus size: 482
3510 TAGTAGTAAG
*
3520 AAAATCAAACATTTCA-TACTCCCCTTTGTTTTCACCTTCACATCTCTTTCCTTTTTCTTCTCCT
1 AAAATCAAACATTTCATTACTCCCCTCTGTTTTCACCTTCACATCTCTTTCCTTTTTCTTCTCCT
* * *
3584 TCCCCATCTTTTCACATTG-ACCGTTCAATGTTTTTCCCTTTTAAATTAAACCA-TCTGTTCTTA
66 TCCCCATCTTTTCACA-TGAACCGTTCAATGTTTTTCCCTTTTGAATTAAACCACCCT-TTCTTC
* * *
3647 AATGCGTCTATTATTAT-C--CAATTAACACCATATTCTATTAAATCTTTGCACTTCGTATTACT
129 AATGCGTCTATTATTATCCAACAATTAACATCATATTCTATTACATCTTTGCACTTCATATTACT
* * *
3709 ATATAATATATTATTTTTTGTTACCAGGGAAATTACTAAAAGACCAAATTGAGGATTAATGTGGT
194 ATAT-ATATATTATTTTTAGTTACCAGGGAAATTACTAAAAGCCCAAATTGAGGATTAATGCGGT
* * * *
3774 GCCACCTTTTG-GTTTTTTTTGGTCTTTTCTCACTTTTAGAATGACTAAAACA-CCCCTCTATGA
258 GCCACCTTTTGACTTTTTTTTAGTCTTTTCTCACTTTTCGGATGACTAAAA-AGCCCCTCTATGA
* *
3837 ATTTCCCACCTTCCTTTTCTTGCTACCCTTTTTTGTAATTACTCATTTCCCTTCCTTAATTGCAT
322 ATTTCCCACCTTCCTTTTCTTGCTACCCTTTTTTGTAATTACTCATTTCCATTCCTTAATTGCTT
*
3902 TTAATTAATGTTTCTCTCCTTTTTCTTTTTTCCTCTCACCAACTCAGCTGCAGCTTCCTTTCAAC
387 TTAATTAATGTTTCTC-CCTTTTTCTTTTTTCCTCTCACCAACTCAGCTGCAACTTCCTTTCAAC
3967 TCCTCAGTACTGATCAATCTTCAGGTTTGCCA
451 TCCTCAGTACTGATCAATCTTCAGGTTTGCCA
* * *
3999 AAAGTCAAACATTTCATTACTCCCCTCTATTTTCACCTACACATCTCTTTCCTTTTTCTTCTCCT
1 AAAATCAAACATTTCATTACTCCCCTCTGTTTTCACCTTCACATCTCTTTCCTTTTTCTTCTCCT
* * * * *
4064 TCCCCTTCCTTTCACATGAACCATTCAATGTTTTTCCCTTGTGAATTAAACCACCCTTTTTTCAA
66 TCCCCATCTTTTCACATGAACCGTTCAATGTTTTTCCCTTTTGAATTAAACCACCCTTTCTTCAA
*
4129 TGCGTCTATTATTATCCAACAATTAACATCATATTCTATTACATCTTTGCA-TTCATATTACTGT
131 TGCGTCTATTATTATCCAACAATTAACATCATATTCTATTACATCTTTGCACTTCATATTACTAT
*
4193 ACTATATATTATTTTTAGTTACCAGGGAAATTAGTAAAAGCCCAAATTGAGGATTAATGCGGTGC
196 A-TATATATTATTTTTAGTTACCAGGGAAATTACTAAAAGCCCAAATTGAGGATTAATGCGGTGC
4258 CACCTTTTGACTTTTTTTTAGTCTTTTCTCACTTTTCGGATGACTAAAAAGCCCCTCTATGAATT
260 CACCTTTTGACTTTTTTTTAGTCTTTTCTCACTTTTCGGATGACTAAAAAGCCCCTCTATGAATT
*
4323 TCCCACCTTCCTTTTCTTGCTACCCTTTTTTGTAATTACTCATTTTCATTCCTTAATTGCTTTTA
325 TCCCACCTTCCTTTTCTTGCTACCCTTTTTTGTAATTACTCATTTCCATTCCTTAATTGCTTTTA
* * * *
4388 ATTAATGTTTCTCCCATTTTCTTTTTTCCTCTTACCAACTCAACTGCATCTTCCTTTCAACTCCT
390 ATTAATGTTTCTCCCTTTTTCTTTTTTCCTCTCACCAACTCAGCTGCAACTTCCTTTCAACTCCT
*
4453 CAGTACTGATTAATCTTCAGGTTTGCCA
455 CAGTACTGATCAATCTTCAGGTTTGCCA
* *
4481 AAAGTCAAACATTTCATTACTCCCCTCTGTTTTCACCTACACATCTCTTTCC-TTTTCTTCTCCT
1 AAAATCAAACATTTCATTACTCCCCTCTGTTTTCACCTTCACATCTCTTTCCTTTTTCTTCTCCT
* *
4545 TCCCCATCTTTTCACATGAACCATTCAATGTTTTTCCCTTTTGAATTAAACCACCCTTT-TTCCA
66 TCCCCATCTTTTCACATGAACCGTTCAATGTTTTTCCCTTTTGAATTAAACCACCCTTTCTTCAA
*
4609 TGCGTCTATTATTATCCAACAATTAACATCATATTCTATTACATCTTTGCA-TTCATATTACTGT
131 TGCGTCTATTATTATCCAACAATTAACATCATATTCTATTACATCTTTGCACTTCATATTACTAT
*
4673 ACTATATATTATTTTTAGTTACCAGGGAAATTAGTAAAAGCCCAAATTGAGGATTAATGCGGTGC
196 A-TATATATTATTTTTAGTTACCAGGGAAATTACTAAAAGCCCAAATTGAGGATTAATGCGGTGC
*
4738 CACCTTTTGACTTTTTTTTAGTCTTTTCTCACTTTTCGGATGAATAAAAAGCCCCTCTATGAATT
260 CACCTTTTGACTTTTTTTTAGTCTTTTCTCACTTTTCGGATGACTAAAAAGCCCCTCTATGAATT
*
4803 TCTCACCTTCCTTTTC-TGCTACCCTTTTTTGTAATTACTCATTTCCATTCCTTAATTGCTTTTA
325 TCCCACCTTCCTTTTCTTGCTACCCTTTTTTGTAATTACTCATTTCCATTCCTTAATTGCTTTTA
* *
4867 ATTAATGTTTCTCCCCTTTTTC-TTTTTCCTCTCACCAACTCAGTTGCAACTTCTTTTCAACTCC
390 ATTAATGTTTCT-CCCTTTTTCTTTTTTCCTCTCACCAACTCAGCTGCAACTTCCTTTCAACTCC
* * *
4931 TCAGTACTGATGAATCTTCAGATTTGCTA
454 TCAGTACTGATCAATCTTCAGGTTTGCCA
* *
4960 AAAATCAAACATTTCATTACTCCTCTCTGTTTTCACCTTCACATTTCTTTCCTTTTTCTTCTCCT
1 AAAATCAAACATTTCATTACTCCCCTCTGTTTTCACCTTCACATCTCTTTCCTTTTTCTTCTCCT
* * * *
5025 TCCCCATCTTTTCACATGGACCGTTCTATGTTTTTCCCTCTTGAATTAAACCACCATTTCTTCAA
66 TCCCCATCTTTTCACATGAACCGTTCAATGTTTTTCCCTTTTGAATTAAACCACCCTTTCTTCAA
* *
5090 TGTGTCTTTTGAATTAAACCACCATTTCTTCAATGTGTCTATTATTTATCCAATTAACATCATAT
131 TGCGTC---T--ATT--------A----TT--A----TC---CA---A--CAATTAACATCATAT
* * *
5155 TCTATTACATCTTTGCACATCCTATTACTATATACTATATATTATTTTTAGTTACTAGGGAAATT
165 TCTATTACATCTTTGCACTTCATATTAC--TATA-TATATATTATTTTTAGTTACCAGGGAAATT
* * * * *
5220 ACTAAAAAG-CCAAATTGAGGATTAATGTGGTGCCAACTTTT-AGC-CTTTTTTGGTCTTTTCAC
227 ACT-AAAAGCCCAAATTGAGGATTAATGCGGTGCCACCTTTTGA-CTTTTTTTTAGTCTTTTCTC
* * * *
5282 ACTTTTCGGACGACTAAAAAGCCCCCCTATGAATTTCCCCCCTTCCTTTTCTTGCTACTCTTTTT
290 ACTTTTCGGATGACTAAAAAGCCCCTCTATGAATTTCCCACCTTCCTTTTCTTGCTACCCTTTTT
* *
5347 TGTAATTACTCATTTCCCTTCCTTAATTGCTTTTAATTAATTTTTCTCCCCTTTTTCTTTTTTTC
355 TGTAATTACTCATTTCCATTCCTTAATTGCTTTTAATTAATGTTTCT-CCCTTTTTC-TTTTTTC
*
5412 CTCTCACCAACTCAGCTGCAACTTCCTTTCAACTCCTCAGTACTGATCAATCTTCAAGTTTGCCA
418 CTCTCACCAACTCAGCTGCAACTTCCTTTCAACTCCTCAGTACTGATCAATCTTCAGGTTTGCCA
*
5477 AAAATCAAACATTTCATTACTACCCTCTGTTTTCACCTTCACATCTCTTTCCTTTTTCTTCTCCT
1 AAAATCAAACATTTCATTACTCCCCTCTGTTTTCACCTTCACATCTCTTTCCTTTTTCTTCTCCT
*
5542 TCCCCATCTTTTCACATGAACCGTTCAATGTTTTTCCCTTTTGAATTAAACCACACTTTCTTCAA
66 TCCCCATCTTTTCACATGAACCGTTCAATGTTTTTCCCTTTTGAATTAAACCACCCTTTCTTCAA
*
5607 TGCGTCTATTATTAT-C--CAATTAACATCATATTCTATTACATCTTTGCACTTCCTATTACT-T
131 TGCGTCTATTATTATCCAACAATTAACATCATATTCTATTACATCTTTGCACTTCATATTACTAT
5668 ATA
196 ATA
5671 GATAAAAGCA
Statistics
Matches: 1525, Mismatches: 96, Indels: 102
0.89 0.06 0.06
Matches are distributed among these distances:
479 189 0.12
480 399 0.26
481 81 0.05
482 206 0.14
483 197 0.13
484 1 0.00
486 3 0.00
494 2 0.00
498 3 0.00
500 3 0.00
504 3 0.00
507 1 0.00
510 1 0.00
512 35 0.02
513 8 0.01
514 63 0.04
515 133 0.09
516 5 0.00
517 192 0.13
ACGTcount: A:0.24, C:0.26, G:0.08, T:0.43
Consensus pattern (482 bp):
AAAATCAAACATTTCATTACTCCCCTCTGTTTTCACCTTCACATCTCTTTCCTTTTTCTTCTCCT
TCCCCATCTTTTCACATGAACCGTTCAATGTTTTTCCCTTTTGAATTAAACCACCCTTTCTTCAA
TGCGTCTATTATTATCCAACAATTAACATCATATTCTATTACATCTTTGCACTTCATATTACTAT
ATATATATTATTTTTAGTTACCAGGGAAATTACTAAAAGCCCAAATTGAGGATTAATGCGGTGCC
ACCTTTTGACTTTTTTTTAGTCTTTTCTCACTTTTCGGATGACTAAAAAGCCCCTCTATGAATTT
CCCACCTTCCTTTTCTTGCTACCCTTTTTTGTAATTACTCATTTCCATTCCTTAATTGCTTTTAA
TTAATGTTTCTCCCTTTTTCTTTTTTCCTCTCACCAACTCAGCTGCAACTTCCTTTCAACTCCTC
AGTACTGATCAATCTTCAGGTTTGCCA
Found at i:5107 original size:33 final size:33
Alignment explanation
Indices: 5065--5129 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
5055 TTTTTCCCTC
5065 TTGAATTAAACCACCATTTCTTCAATGTGTCTT
1 TTGAATTAAACCACCATTTCTTCAATGTGTCTT
5098 TTGAATTAAACCACCATTTCTTCAATGTGTCT
1 TTGAATTAAACCACCATTTCTTCAATGTGTCT
5130 ATTATTTATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.42
Consensus pattern (33 bp):
TTGAATTAAACCACCATTTCTTCAATGTGTCTT
Found at i:6033 original size:15 final size:15
Alignment explanation
Indices: 6013--6044 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6003 GTCCCTTTTT
*
6013 AAAATTTTTCAAAAA
1 AAAATTCTTCAAAAA
6028 AAAATTCTTCAAAAA
1 AAAATTCTTCAAAAA
6043 AA
1 AA
6045 TTCCTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAATTCTTCAAAAA
Found at i:6057 original size:13 final size:13
Alignment explanation
Indices: 6024--6057 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
6014 AAATTTTTCA
*
6024 AAAAAAAATTCTT
1 AAAAAAAATTCCT
*
6037 CAAAAAAATTCCT
1 AAAAAAAATTCCT
6050 AAAAAAAA
1 AAAAAAAA
6058 GGGAAGTGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.21
Consensus pattern (13 bp):
AAAAAAAATTCCT
Found at i:8903 original size:94 final size:94
Alignment explanation
Indices: 8742--8928 Score: 356
Period size: 94 Copynumber: 2.0 Consensus size: 94
8732 TCCCTGATTT
*
8742 TCAATTAAGGACACGGGAGTTGAAAACGATGGATTTTGATCGATTTATGGCACCATATGGTTGGA
1 TCAATTAAGGACACAGGAGTTGAAAACGATGGATTTTGATCGATTTATGGCACCATATGGTTGGA
8807 GCCATATCCTAGAGTAATATTAATGGTTC
66 GCCATATCCTAGAGTAATATTAATGGTTC
*
8836 TCAATTAAGGACACATGAGTTGAAAACGATGGATTTTGATCGATTTATGGCACCATATGGTTGGA
1 TCAATTAAGGACACAGGAGTTGAAAACGATGGATTTTGATCGATTTATGGCACCATATGGTTGGA
8901 GCCATATCCTAGAGTAATATTAATGGTT
66 GCCATATCCTAGAGTAATATTAATGGTT
8929 TTATGGCGTG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 91 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (94 bp):
TCAATTAAGGACACAGGAGTTGAAAACGATGGATTTTGATCGATTTATGGCACCATATGGTTGGA
GCCATATCCTAGAGTAATATTAATGGTTC
Found at i:9557 original size:23 final size:23
Alignment explanation
Indices: 9531--9588 Score: 107
Period size: 23 Copynumber: 2.5 Consensus size: 23
9521 TTTTGGTTTG
*
9531 ATCAACCTTGTTTTTACTTTTTC
1 ATCACCCTTGTTTTTACTTTTTC
9554 ATCACCCTTGTTTTTACTTTTTC
1 ATCACCCTTGTTTTTACTTTTTC
9577 ATCACCCTTGTT
1 ATCACCCTTGTT
9589 CTTAAAGTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.16, C:0.26, G:0.05, T:0.53
Consensus pattern (23 bp):
ATCACCCTTGTTTTTACTTTTTC
Found at i:10732 original size:7 final size:7
Alignment explanation
Indices: 10720--10752 Score: 52
Period size: 6 Copynumber: 5.0 Consensus size: 7
10710 CGCAGAGCGT
10720 GAAAAAA
1 GAAAAAA
10727 G-AAAAA
1 GAAAAAA
10733 GAAAAAA
1 GAAAAAA
10740 G-AAAAA
1 GAAAAAA
10746 GAAAAAA
1 GAAAAAA
10753 AATTAATCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 12 0.50
7 12 0.50
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
GAAAAAA
Found at i:10738 original size:13 final size:13
Alignment explanation
Indices: 10720--10752 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
10710 CGCAGAGCGT
10720 GAAAAAAGAAAAA
1 GAAAAAAGAAAAA
10733 GAAAAAAGAAAAA
1 GAAAAAAGAAAAA
10746 GAAAAAA
1 GAAAAAA
10753 AATTAATCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
GAAAAAAGAAAAA
Found at i:20980 original size:15 final size:16
Alignment explanation
Indices: 20949--20980 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
20939 CTTTTGGGTC
20949 TTTTTTTTTTCCTCTT
1 TTTTTTTTTTCCTCTT
20965 TTTTTTTTTTCC-CTT
1 TTTTTTTTTTCCTCTT
20980 T
1 T
20981 CTATGTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTTTTTTCCTCTT
Found at i:32524 original size:24 final size:24
Alignment explanation
Indices: 32497--32547 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
32487 TTTTTACCCA
32497 ATTCCTTATTACATTTGGATTAGG
1 ATTCCTTATTACATTTGGATTAGG
*
32521 ATTCCTTATTAGATTTGGATTAGG
1 ATTCCTTATTACATTTGGATTAGG
32545 ATT
1 ATT
32548 TTTCTAGAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.25, C:0.10, G:0.18, T:0.47
Consensus pattern (24 bp):
ATTCCTTATTACATTTGGATTAGG
Found at i:32758 original size:39 final size:39
Alignment explanation
Indices: 32715--32792 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
32705 GCTGATTTAG
*
32715 GTAGCTTTAGGTATTGATTTGATAGTGCAGATTTGTGGC
1 GTAGCTTTAAGTATTGATTTGATAGTGCAGATTTGTGGC
32754 GTAGCTTTAAGTATTGATTTGATAGTGCAGATTTGTGGC
1 GTAGCTTTAAGTATTGATTTGATAGTGCAGATTTGTGGC
32793 ATAATTTTGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.22, C:0.08, G:0.29, T:0.41
Consensus pattern (39 bp):
GTAGCTTTAAGTATTGATTTGATAGTGCAGATTTGTGGC
Found at i:38347 original size:64 final size:62
Alignment explanation
Indices: 38268--38395 Score: 229
Period size: 64 Copynumber: 2.0 Consensus size: 62
38258 TTCTTTTTCA
38268 TATAAATTAGAAGCACGGAGAAATATATCTACAGCAAAACACACACACACACACAAATGACTAC
1 TATAAATTAGAAGCACGGAGAAATATATCTACA-CAAAA-ACACACACACACACAAATGACTAC
*
38332 TATAAATTAGAAGCACGGAGAAATATATCTACACCAAAACACACACACACACAAATGACTAC
1 TATAAATTAGAAGCACGGAGAAATATATCTACACAAAAACACACACACACACAAATGACTAC
38394 TA
1 TA
38396 AGAGAGACTG
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
62 26 0.41
63 4 0.06
64 33 0.52
ACGTcount: A:0.50, C:0.23, G:0.10, T:0.16
Consensus pattern (62 bp):
TATAAATTAGAAGCACGGAGAAATATATCTACACAAAAACACACACACACACAAATGACTAC
Found at i:39085 original size:59 final size:59
Alignment explanation
Indices: 38993--39111 Score: 238
Period size: 59 Copynumber: 2.0 Consensus size: 59
38983 TTAAACCATC
38993 TATCATATGTGCACTCTTTGCTAAAACACTGATTCAACATAACTACCCAAAGGGGAGAG
1 TATCATATGTGCACTCTTTGCTAAAACACTGATTCAACATAACTACCCAAAGGGGAGAG
39052 TATCATATGTGCACTCTTTGCTAAAACACTGATTCAACATAACTACCCAAAGGGGAGAG
1 TATCATATGTGCACTCTTTGCTAAAACACTGATTCAACATAACTACCCAAAGGGGAGAG
39111 T
1 T
39112 TGGATATATT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (59 bp):
TATCATATGTGCACTCTTTGCTAAAACACTGATTCAACATAACTACCCAAAGGGGAGAG
Found at i:40385 original size:65 final size:65
Alignment explanation
Indices: 40222--40415 Score: 363
Period size: 65 Copynumber: 3.0 Consensus size: 65
40212 GATTATGGGC
*
40222 TTTCTTTGTTACAATAATCTGGGTTTGTTTGATGATGATGAAATTGCAGAGATAGGGTT-GGATT
1 TTTCTTTGTAACAATAATCTGGGTTTGTTTGATGATGATGAAATTGCAGAGATAGGGTTGGGATT
*
40286 TTTCTTTGTAACAATAATCTGGGTTTGTTTGATGATGATGGAATTGCAGAGATAGGGTTGGGATT
1 TTTCTTTGTAACAATAATCTGGGTTTGTTTGATGATGATGAAATTGCAGAGATAGGGTTGGGATT
40351 TTTCTTTGTAACAATAATCTGGGTTTGTTTGATGATGATGAAATTGCAGAGATAGGGTTGGGATT
1 TTTCTTTGTAACAATAATCTGGGTTTGTTTGATGATGATGAAATTGCAGAGATAGGGTTGGGATT
40416 GTTGGAGAGA
Statistics
Matches: 126, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
64 57 0.45
65 69 0.55
ACGTcount: A:0.25, C:0.06, G:0.28, T:0.41
Consensus pattern (65 bp):
TTTCTTTGTAACAATAATCTGGGTTTGTTTGATGATGATGAAATTGCAGAGATAGGGTTGGGATT
Found at i:40838 original size:31 final size:31
Alignment explanation
Indices: 40800--40862 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
40790 TCCGTTTAGG
40800 CTTGGGCCAAGGATAAGAAGAACAATCAGTA
1 CTTGGGCCAAGGATAAGAAGAACAATCAGTA
40831 CTTGGGCCAAGGATAAGAAGAACAATCAGTA
1 CTTGGGCCAAGGATAAGAAGAACAATCAGTA
40862 C
1 C
40863 CTTTAACTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.41, C:0.17, G:0.25, T:0.16
Consensus pattern (31 bp):
CTTGGGCCAAGGATAAGAAGAACAATCAGTA
Done.