Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019386.1 Corchorus olitorius cultivar O-4 contig19419, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21543

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2695--2777
42
2.0
43
85
7
116
24
19
21
34
1.96
2765--2804
20
2.0
20
95
0
71
37
20
17
25
1.94
3263--3293
12
2.6
12
94
0
53
48
32
19
0
1.49
4231--4338
43
2.7
39
78
10
126
38
13
12
35
1.82
4244--4327
43
2.0
43
90
0
132
40
13
11
34
1.81
4444--4507
29
2.2
29
100
0
128
35
7
15
40
1.76
13904--14235
163
2.1
154
92
7
551
51
5
15
27
1.66
15407--15637
22
10.5
21
70
9
124
34
10
17
37
1.85
15437--15637
66
3.0
67
77
11
198
35
11
17
35
1.86
15642--15789
22
6.7
22
73
10
106
35
8
17
38
1.81
15727--15803
22
3.5
22
74
11
70
36
6
15
41
1.73
18786--18851
32
2.0
30
83
13
78
18
13
16
51
1.76
19013--19143
22
5.9
22
76
10
106
38
9
13
37
1.78
19040--19233
22
9.0
21
72
10
115
40
10
14
35
1.80
19038--19229
44
4.4
44
73
11
164
41
10
13
34
1.79
19330--19869
22
24.7
22
69
11
175
38
9
15
35
1.81
19477--19556
23
3.5
23
89
5
110
36
6
18
38
1.76
19311--19781
22
21.6
22
72
12
276
37
9
16
35
1.82
19311--19876
44
13.0
43
69
13
234
38
9
16
35
1.82
19831--19884
22
2.5
22
78
6
56
44
9
14
31
1.77
20998--21108
33
3.4
33
88
0
168
9
32
38
18
1.84

Tables:   1

The End!