Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019387.1 Corchorus olitorius cultivar O-4 contig19420, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118126

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4079--4103
12
2.1
12
100
0
50
76
0
0
24
0.80
4075--4127
19
2.8
19
75
11
54
64
3
0
32
1.12
22037--22113
37
2.0
37
87
7
102
31
22
32
14
1.93
23019--23049
14
2.2
14
100
0
62
35
0
0
64
0.94
24007--24056
26
1.9
26
100
0
100
32
4
12
52
1.57
28299--28345
4
11.8
4
77
8
51
44
25
2
27
1.65
28304--28344
13
3.0
13
92
7
64
43
26
0
29
1.55
28422--28455
17
2.1
16
88
5
50
50
0
44
5
1.26
39307--39331
12
2.1
12
100
0
50
40
16
8
36
1.77
39680--39840
59
2.7
59
89
1
243
24
34
9
31
1.87
39799--40005
85
2.5
84
88
6
305
25
37
5
31
1.80
39878--40152
139
1.9
142
88
3
421
24
38
6
30
1.80
39744--40183
224
2.0
221
90
2
693
24
37
6
31
1.80
40028--40183
81
1.9
81
93
0
267
25
38
3
32
1.74
40100--40455
104
3.5
102
85
3
463
27
34
6
31
1.82
40468--40714
81
3.1
81
86
4
281
26
33
6
33
1.82
40693--40736
22
2.0
22
86
0
61
38
25
9
27
1.86
40894--40934
21
2.1
19
86
13
57
36
24
12
26
1.91
40622--40964
99
3.5
97
80
14
382
27
32
7
31
1.86
40921--41033
58
1.9
58
92
0
190
22
39
10
27
1.87
40028--41110
516
2.1
516
92
2
1789
26
35
7
31
1.83
40923--41252
139
2.4
137
89
2
480
23
36
8
31
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53139--53205
34
2.0
34
94
2
118
16
5
37
40
1.73
65509--65624
38
3.1
38
100
0
232
21
12
18
47
1.82
68934--69048
58
2.0
58
98
0
221
25
18
13
43
1.85
77117--78059
437
2.1
435
83
4
1176
41
13
14
30
1.85
78412--78715
135
2.3
133
86
3
418
23
16
19
40
1.91
78790--78824
11
3.2
11
91
0
61
0
2
17
80
0.84
82455--82537
6
13.5
6
78
18
91
81
13
1
3
0.87
82451--82537
23
3.6
23
76
19
88
81
13
1
3
0.88
85726--85863
69
2.0
69
88
0
204
46
10
17
26
1.79
93049--93079
4
7.8
4
100
0
62
77
0
0
22
0.77
96638--96686
25
2.0
25
91
0
80
38
4
14
42
1.64
96740--96768
11
2.5
12
94
5
51
62
0
17
20
1.33
100974--101063
45
2.0
45
95
0
162
42
15
16
25
1.88
102038--102065
2
14.0
2
100
0
56
50
0
0
50
1.00
102941--102994
8
6.8
8
82
0
54
53
14
0
31
1.41
111548--111598
25
2.0
25
96
0
93
25
19
3
50
1.64
112615--112664
21
2.4
21
86
6
66
50
0
50
0
1.00
112618--112670
27
2.0
27
85
7
72
50
0
49
0
1.00

Tables:   1

The End!