Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019388.1 Corchorus olitorius cultivar O-4 contig19421, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53459

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
231--302
32
2.2
32
85
4
92
47
8
13
30
1.73
10392--10812
60
7.0
60
87
1
592
31
19
22
27
1.97
11267--11306
20
2.0
20
90
0
62
37
20
20
22
1.94
11585--11639
24
2.3
24
100
0
110
30
16
25
27
1.96
11884--11980
49
2.0
49
93
0
167
41
6
7
45
1.57
12170--12214
21
2.1
21
100
0
90
35
31
8
24
1.86
20187--20231
14
3.2
13
77
17
54
20
8
8
62
1.51
35431--35462
3
10.7
3
93
0
55
34
3
0
62
1.11
36479--36535
6
9.3
6
90
1
87
35
1
14
49
1.53
36655--36710
16
3.4
16
78
11
60
41
0
1
57
1.09
36658--36697
13
2.9
14
85
11
55
40
0
0
60
0.97
36656--36818
24
7.3
21
91
6
89
35
0
11
52
1.38
36656--36716
12
4.8
13
75
17
58
39
0
3
57
1.15
36700--36863
6
27.5
6
98
1
321
33
0
16
50
1.46
37023--37066
12
3.7
12
90
0
52
36
0
13
50
1.42
37032--37066
6
5.8
6
93
0
61
37
0
14
48
1.44
36996--37066
18
3.8
18
81
9
63
38
1
8
52
1.41
37869--37947
6
13.5
6
91
2
126
32
1
17
48
1.56
37857--37960
46
2.4
42
80
19
147
34
0
16
48
1.53
38107--38142
3
12.0
3
100
0
72
66
0
0
33
0.92
51294--51381
31
2.8
31
96
1
158
39
12
3
44
1.59

Tables:   1

The End!