Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019390.1 Corchorus olitorius cultivar O-4 contig19423, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9798
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:6926 original size:19 final size:19

Alignment explanation


    Indices: 6899--6942  Score: 81
    Period size: 19  Copynumber: 2.4  Consensus size: 19

       6889 ATTTTTCAAG

                               
       6899 AAAAG-TTTCTCTTTTAAT
          1 AAAAGATTTCTCTTTTAAT

                               
       6917 AAAAGATTTCTCTTTTAAT
          1 AAAAGATTTCTCTTTTAAT

                   
       6936 AAAAGAT
          1 AAAAGAT

       6943 GTTAATTTTA


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  18    5  0.20
  19   20  0.80

ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43


Consensus pattern (19 bp):   
AAAAGATTTCTCTTTTAAT

Found at i:6951 original size:19 final size:19

Alignment explanation


    Indices: 6910--6952  Score: 52
    Period size: 19  Copynumber: 2.3  Consensus size: 19

       6900 AAAGTTTCTC

                             **
       6910 TTTTAATAAAAGATTTCTC
          1 TTTTAATAAAAGATTTCAA

                                
       6929 TTTTAATAAAAGATGTT-AA
          1 TTTTAATAAAAGAT-TTCAA

                 
       6948 TTTTA
          1 TTTTA

       6953 TTAGAACAAA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  19   19  0.90
  20    2  0.10

ACGTcount: A:0.40, C:0.05, G:0.07, T:0.49


Consensus pattern (19 bp):   
TTTTAATAAAAGATTTCAA
Done.