Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019392.1 Corchorus olitorius cultivar O-4 contig19425, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51543

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10553--10578
1
26.0
1
100
0
52
100
0
0
0
0.00
13856--13882
6
4.5
6
100
0
54
18
0
37
44
1.50
18036--18206
67
2.5
69
88
2
256
28
8
19
43
1.81
18293--18360
34
2.0
34
82
2
82
23
8
11
55
1.63
25667--25728
23
2.7
23
79
20
67
16
20
41
20
1.90
32572--33007
127
3.4
127
96
0
791
14
25
29
31
1.95
40079--40161
23
3.6
23
91
3
132
18
13
42
26
1.87
40330--40586
125
2.0
128
88
7
389
36
10
1
50
1.49
40572--40610
14
2.9
13
80
3
51
41
2
2
53
1.28
47009--47059
17
3.1
16
86
8
66
21
21
21
35
1.96

Tables:   1

The End!