Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019393.1 Corchorus olitorius cultivar O-4 contig19426, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107150

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3391--3452
31
2.0
31
90
0
97
35
11
20
32
1.88
6832--6867
3
12.0
3
93
0
63
63
0
33
2
1.08
8138--8165
12
2.3
12
100
0
56
57
21
0
21
1.41
8829--8875
22
2.1
22
92
0
76
51
19
10
19
1.75
23077--23111
17
2.1
17
88
0
52
54
2
5
37
1.39
24187--24222
9
3.9
9
85
7
54
30
0
27
41
1.56
24185--24221
19
1.9
19
100
0
74
27
0
29
43
1.55
27378--27419
18
2.3
18
87
0
57
50
30
11
7
1.66
34584--34687
56
1.9
55
86
9
153
37
11
14
36
1.82
39898--39923
3
8.7
3
100
0
52
69
0
30
0
0.89
40184--40228
2
22.5
2
100
0
90
51
48
0
0
1.00
40228--40258
2
16.0
2
93
6
55
48
0
0
51
1.00
43853--43893
21
1.9
22
85
5
57
9
17
29
43
1.80
44529--44563
16
2.2
16
94
0
61
31
28
8
31
1.87
48545--48595
22
2.3
22
89
0
75
33
15
5
45
1.71
48589--48886
22
13.6
22
71
10
155
38
16
9
35
1.81
48589--48886
44
6.8
44
73
15
179
38
16
9
35
1.81
48720--48912
107
1.8
107
83
10
261
38
18
7
35
1.79
48545--48924
44
8.7
43
70
15
129
37
17
8
36
1.80
48766--48934
22
7.8
21
80
10
94
37
20
5
36
1.76
49099--49154
22
2.6
21
81
13
60
39
10
3
46
1.56
49208--49348
22
6.5
22
75
5
110
34
16
12
37
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49208--49621
66
6.2
66
71
11
261
34
18
10
37
1.85
49386--49778
22
18.0
21
75
10
260
36
18
9
35
1.83
49566--49778
87
2.4
85
74
9
205
40
17
7
33
1.78
58060--58118
31
1.9
31
92
0
100
37
20
10
32
1.86
59828--59875
22
2.1
24
92
7
82
43
4
10
41
1.58
59805--59843
2
19.5
2
89
0
60
48
2
2
46
1.29
68813--68866
28
1.9
28
88
0
81
24
7
24
44
1.79
74354--74620
107
2.5
107
86
2
351
41
7
8
41
1.64
76110--76236
54
2.4
54
93
1
211
29
7
9
52
1.62
76110--76265
54
2.9
53
88
5
199
30
7
10
51
1.63
82503--82583
42
1.9
42
92
0
135
48
16
7
28
1.73
84559--84596
20
1.9
20
94
0
67
36
26
21
15
1.93
85148--85223
29
2.6
29
80
2
89
18
23
15
42
1.89
90452--90509
21
3.0
21
75
25
65
20
6
24
48
1.74
96314--96347
2
17.0
2
100
0
68
0
0
50
50
1.00
104955--105006
27
1.9
27
84
0
68
32
13
3
50
1.60
104957--105006
25
1.9
26
84
8
66
34
14
4
48
1.62

Tables:   1

The End!