Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019394.1 Corchorus olitorius cultivar O-4 contig19427, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84707

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
611--637
4
6.8
4
100
0
54
74
0
0
25
0.83
25604--25656
26
2.0
26
85
0
70
50
7
9
32
1.62
27535--27574
20
2.0
21
85
14
57
57
2
15
25
1.50
28564--28605
16
2.6
16
84
0
66
52
0
0
47
1.00
37044--37079
6
6.0
6
100
0
72
16
33
16
33
1.92
39467--39723
88
2.9
88
90
2
426
26
10
18
44
1.82
47945--48154
108
1.9
108
94
1
368
21
25
24
27
2.00
48813--48854
12
3.5
12
93
6
68
69
7
7
16
1.34
55644--55733
45
2.0
45
100
0
180
46
17
13
22
1.83
67172--67208
12
2.7
14
84
16
51
83
0
0
16
0.64
67174--67211
18
2.2
16
90
9
58
86
0
0
13
0.56
69174--69205
17
1.9
17
93
6
57
40
9
0
50
1.35
77198--77310
46
2.5
46
100
0
226
36
11
19
32
1.88
81224--81326
50
2.1
50
96
0
188
41
20
10
27
1.85
83876--83933
17
3.5
17
79
6
57
62
5
0
32
1.18
84677--84705
2
15.0
2
92
7
51
48
0
0
51
1.00

Tables:   1

The End!