Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019395.1 Corchorus olitorius cultivar O-4 contig19428, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 116949
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:26769 original size:22 final size:22
Alignment explanation
Indices: 26744--26811 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
26734 TTAATTTGTC
26744 CCCAATTAACTAAAAGATTCTG
1 CCCAATTAACTAAAAGATTCTG
* *
26766 CCCAAATTATGC-ATAA-A-TC--
1 CCC-AATTA-ACTAAAAGATTCTG
*
26785 CCCAATTAACTAAAAGGTTCTG
1 CCCAATTAACTAAAAGATTCTG
26807 CCCAA
1 CCCAA
26812 ATTATGCATA
Statistics
Matches: 34, Mismatches: 5, Indels: 14
0.64 0.09 0.26
Matches are distributed among these distances:
17 1 0.03
18 8 0.24
19 3 0.09
20 2 0.06
21 2 0.06
22 9 0.26
23 8 0.24
24 1 0.03
ACGTcount: A:0.40, C:0.26, G:0.09, T:0.25
Consensus pattern (22 bp):
CCCAATTAACTAAAAGATTCTG
Found at i:26773 original size:23 final size:23
Alignment explanation
Indices: 26747--26815 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 23
26737 ATTTGTCCCC
26747 AATTAACTAAAAGATTCTGCCCA
1 AATTAACTAAAAGATTCTGCCCA
* *
26770 AATTATGC-ATAA-A-TC--CCC-
1 AATTA-ACTAAAAGATTCTGCCCA
*
26788 AATTAACTAAAAGGTTCTGCCCA
1 AATTAACTAAAAGATTCTGCCCA
26811 AATTA
1 AATTA
26816 TGCATAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 14
0.64 0.09 0.26
Matches are distributed among these distances:
17 1 0.03
18 8 0.24
19 3 0.09
20 2 0.06
21 2 0.06
22 4 0.12
23 13 0.38
24 1 0.03
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.28
Consensus pattern (23 bp):
AATTAACTAAAAGATTCTGCCCA
Found at i:26799 original size:41 final size:41
Alignment explanation
Indices: 26742--26824 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
26732 TTTTAATTTG
26742 TCCCCAATTAACTAAAAGATTCTGCCCAAATTATGCATAAA
1 TCCCCAATTAACTAAAAGATTCTGCCCAAATTATGCATAAA
*
26783 TCCCCAATTAACTAAAAGGTTCTGCCCAAATTATGCATAAA
1 TCCCCAATTAACTAAAAGATTCTGCCCAAATTATGCATAAA
26824 T
1 T
26825 TGAAATGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (41 bp):
TCCCCAATTAACTAAAAGATTCTGCCCAAATTATGCATAAA
Found at i:47755 original size:26 final size:26
Alignment explanation
Indices: 47726--47779 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
47716 CACATGTTAC
*
47726 CTTTAGGAACCCGTTTATGTAGACTG
1 CTTTAGGAACCCATTTATGTAGACTG
47752 CTTTAGGAACCCATTTATGTAGACTG
1 CTTTAGGAACCCATTTATGTAGACTG
47778 CT
1 CT
47780 AAACTCTACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (26 bp):
CTTTAGGAACCCATTTATGTAGACTG
Found at i:48183 original size:7 final size:7
Alignment explanation
Indices: 48154--48186 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
48144 CTGCTCTTTC
48154 CCTT-CT
1 CCTTCCT
*
48160 CCCTCCT
1 CCTTCCT
48167 CCTTCCT
1 CCTTCCT
48174 CCTTCCT
1 CCTTCCT
48181 CCTTCC
1 CCTTCC
48187 CTTCTCTTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 3 0.12
7 21 0.88
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (7 bp):
CCTTCCT
Found at i:63606 original size:29 final size:30
Alignment explanation
Indices: 63572--63632 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
63562 TATAAATAAT
* *
63572 ATAATATAATTAAAT-AGTTATATTTATAC
1 ATAATAAAATTAAATAAGTTATATGTATAC
* *
63601 ATAATAAAATTGAATAATTTATATGTATAC
1 ATAATAAAATTAAATAAGTTATATGTATAC
63631 AT
1 AT
63633 TAATTAGAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 13 0.48
30 14 0.52
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (30 bp):
ATAATAAAATTAAATAAGTTATATGTATAC
Found at i:69399 original size:12 final size:11
Alignment explanation
Indices: 69382--69423 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 11
69372 TTATCAAGTG
69382 AAATTTGAGGCT
1 AAATTTG-GGCT
69394 AAATTTGGTGCT
1 AAATTTGG-GCT
69406 AAATTTGTGGCT
1 AAATTTG-GGCT
69418 AAATTT
1 AAATTT
69424 AAGGAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
11 1 0.04
12 26 0.93
13 1 0.04
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (11 bp):
AAATTTGGGCT
Found at i:73891 original size:23 final size:22
Alignment explanation
Indices: 73544--74134 Score: 191
Period size: 22 Copynumber: 27.2 Consensus size: 22
73534 ATTACACTAT
*
73544 TTTTGATGACC-TCCTTATGAAA
1 TTTTGATAACCTTCC-TATGAAA
*
73566 TTTTGATAACTTTCCTATGAAA
1 TTTTGATAACCTTCCTATGAAA
* ** * *
73588 TTTTAATAACGATACTATGGAA
1 TTTTGATAACCTTCCTATGAAA
** ** **
73610 TTTCAATAATATTTTTAT--AA
1 TTTTGATAACCTTCCTATGAAA
** *
73630 TTTTTTTAACCTTCTTATGAAA
1 TTTTGATAACCTTCCTATGAAA
* *
73652 TTTT-ATTAACCTCCCTGA-GGAA
1 TTTTGA-TAACCTTCCT-ATGAAA
73674 TTTTGA-AGACC-TCACTATGAAA
1 TTTTGATA-ACCTTC-CTATGAAA
*
73696 TTTTGATAA-CTTCCCAATGAAA
1 TTTTGATAACCTT-CCTATGAAA
* ** *
73718 TTTTGATGACCAACACTATGAGA
1 TTTTGATAACCTTC-CTATGAAA
* *
73741 TGTTGATAACC-TCCATATGATA
1 TTTTGATAACCTTCC-TATGAAA
* * * *
73763 TATTAATAACC-ACGTTATGAAAA
1 TTTTGATAACCTTC-CTATG-AAA
*
73786 TTTT-AAAACC-TCCATATG-AA
1 TTTTGATAACCTTCC-TATGAAA
*
73806 TTGTT-AGTAA--TTACACTCTGAAA
1 TT-TTGA-TAACCTT-C-CTATGAAA
* * *
73829 TTTTGATAATCATACTATGAAA
1 TTTTGATAACCTTCCTATGAAA
*
73851 TTGTGATAACC-TCGCTATGAAA
1 TTTTGATAACCTTC-CTATGAAA
*
73873 TTTTGATAAACCTTCCTATAAAA
1 TTTTGAT-AACCTTCCTATGAAA
*
73896 TTTTGATGAACC-TCCTTATAAAAA
1 TTTTGAT-AACCTTCC-TAT-GAAA
*
73920 TTTTGATAA-CATCCTTATGAAA
1 TTTTGATAACCTTCC-TATGAAA
* *
73942 TCTTGATAA-----CTA-CAAA
1 TTTTGATAACCTTCCTATGAAA
*
73958 TTTTGATAACCTCCCTATG-AA
1 TTTTGATAACCTTCCTATGAAA
* ***
73979 TGTTTGATAGCCTAATTATGAAA
1 T-TTTGATAACCTTCCTATGAAA
* * *
74002 TTTTGTTAATCTCCCTATGAAA
1 TTTTGATAACCTTCCTATGAAA
* * * *
74024 ATTTGATCTA-CAT-ATATGAAA
1 TTTTGAT-AACCTTCCTATGAAA
* *
74045 TTTTGATAACCCTCTTATGAAA
1 TTTTGATAACCTTCCTATGAAA
* ** *
74067 TTTTGA-AAACTAAACTATGAAT
1 TTTTGATAACCT-TCCTATGAAA
* *
74089 TTTTGATAACCTTCATAAGAAA
1 TTTTGATAACCTTCCTATGAAA
* *
74111 TTTTGATATCCTCCCTA--AAA
1 TTTTGATAACCTTCCTATGAAA
74131 TTTT
1 TTTT
74135 AATTACTCCA
Statistics
Matches: 428, Mismatches: 95, Indels: 94
0.69 0.15 0.15
Matches are distributed among these distances:
16 11 0.03
17 2 0.00
18 1 0.00
20 26 0.06
21 34 0.08
22 264 0.62
23 76 0.18
24 14 0.03
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (22 bp):
TTTTGATAACCTTCCTATGAAA
Found at i:74277 original size:22 final size:22
Alignment explanation
Indices: 74250--74679 Score: 158
Period size: 22 Copynumber: 19.4 Consensus size: 22
74240 ATTTTAAAAA
* *
74250 TTTGATAACTTTTTTATGAAAT
1 TTTGATAACCTTTCTATGAAAT
* *
74272 TTTGATAACCTCTCTATAAAAT
1 TTTGATAACCTTTCTATGAAAT
* * *
74294 TTTGTTGACCCTTCTATGAAAT
1 TTTGATAACCTTTCTATGAAAT
* *
74316 TTTGATAATCAC-AT-TATGTAAT
1 TTTGATAA-C-CTTTCTATGAAAT
*** *
74338 TTTGATAACCTCGATTTGAAAT
1 TTTGATAACCTTTCTATGAAAT
****
74360 TTTGATAACAACACTATGAAAT
1 TTTGATAACCTTTCTATGAAAT
* *
74382 TTTGATAATCTTCCTAT-AAAT
1 TTTGATAACCTTTCTATGAAAT
*
74403 TTTGATAATCCGATCTCTATGAAAT
1 TTTGATAA-CC--TTTCTATGAAAT
* * ** *
74428 TTCGATAATCACTCTATGAGA-
1 TTTGATAACCTTTCTATGAAAT
*
74449 TTTGATAACC-TTCTATCAAAT
1 TTTGATAACCTTTCTATGAAAT
* * ** *
74470 TTTGGTACTCCTTATGAAATTGAGACT
1 TTTGATA-ACCTT-T-CTA-TGA-AAT
74497 TTT-ATAACC-TTCATATGAAAT
1 TTTGATAACCTTTC-TATGAAAT
* *** **
74518 TTTGATAATCACACTAAAAAAT
1 TTTGATAACCTTTCTATGAAAT
* *** **
74540 TTTGATAATCACACTAAAAAAT
1 TTTGATAACCTTTCTATGAAAT
***
74562 TTTGATAACCACACTATGAAAT
1 TTTGATAACCTTTCTATGAAAT
** *
74584 TTTGATAACCTCCCCATGAAAT
1 TTTGATAACCTTTCTATGAAAT
*
74606 ATT-AGTAACC-TTCATATGAAAT
1 TTTGA-TAACCTTTC-TATGAAAT
* ***
74628 TTTGTTAACCACACTATGAAAT
1 TTTGATAACCTTTCTATGAAAT
* ** *
74650 TTTTATAACCTCGCTATGACAT
1 TTTGATAACCTTTCTATGAAAT
74672 TTTGATAA
1 TTTGATAA
74680 TCTCCTTGAT
Statistics
Matches: 311, Mismatches: 75, Indels: 44
0.72 0.17 0.10
Matches are distributed among these distances:
20 8 0.03
21 34 0.11
22 230 0.74
23 7 0.02
24 9 0.03
25 14 0.05
26 4 0.01
27 5 0.02
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.40
Consensus pattern (22 bp):
TTTGATAACCTTTCTATGAAAT
Found at i:74339 original size:44 final size:44
Alignment explanation
Indices: 74219--74412 Score: 157
Period size: 44 Copynumber: 4.4 Consensus size: 44
74209 AGAAATACCA
* * * **
74219 CTATGAAATTTTGGTAATCACATTTTAAAAATTTGATAACTTTT
1 CTATGAAATTTTGATAATCACATTATAAAATTTTGATAACCCTT
* * * * *
74263 TTATGAAATTTTGATAACCTC-TCTATAAAATTTTGTTGACCCTT
1 CTATGAAATTTTGATAATCACAT-TATAAAATTTTGATAACCCTT
**
74307 CTATGAAATTTTGATAATCACATTATGTAATTTTGATAA-CC-T
1 CTATGAAATTTTGATAATCACATTATAAAATTTTGATAACCCTT
* * * *
74349 CGATTTGAAATTTTGATAA-CAACACTATGAAATTTTGATAA-TCTT
1 C--TATGAAATTTTGATAATC-ACATTATAAAATTTTGATAACCCTT
74394 CCTAT-AAATTTTGATAATC
1 -CTATGAAATTTTGATAATC
74413 CGATCTCTAT
Statistics
Matches: 120, Mismatches: 22, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
42 2 0.02
43 16 0.13
44 99 0.82
45 2 0.02
46 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.43
Consensus pattern (44 bp):
CTATGAAATTTTGATAATCACATTATAAAATTTTGATAACCCTT
Found at i:74630 original size:158 final size:159
Alignment explanation
Indices: 74337--74631 Score: 354
Period size: 158 Copynumber: 1.9 Consensus size: 159
74327 CATTATGTAA
* ** * *
74337 TTTTGATAACCTCGATTTGAAATTTTGATAACAACACTATGAAATTTTGATAATCTTCCTATAAA
1 TTTTGATAACCTCGATATGAAATTTTGATAACAACACTAAAAAATTTTGATAATCTACCTAAAAA
* * * * *
74402 TTTTGATAATCCGATCTCTATGAAATTTCGATAATCACTCTATGAGATTTGATAACCTTCTATCA
66 TTTTGATAATCCGATCACTATGAAATTTCGATAACCACCCCATGAAATTTGATAACCTTCTATCA
74467 AATTTTGGTACTCCTTATGAAATTGAGAC
131 AATTTTGGTACTCCTTATGAAATTGAGAC
74496 TTTT-ATAACCTTC-ATATGAAATTTTGATAATC-ACACTAAAAAATTTTGATAATC-ACACTAA
1 TTTTGATAACC-TCGATATGAAATTTTGATAA-CAACACTAAAAAATTTTGATAATCTAC-CT-A
* *
74557 AAAATTTTGATAA-CC-A-CACTATGAAATTTTGATAACCTCCCCATGAAATATT-AGTAACCTT
62 AAAATTTTGATAATCCGATCACTATGAAATTTCGATAACCACCCCATGAAAT-TTGA-TAACCTT
*
74618 CATATGAAATTTTG
125 C-TATCAAATTTTG
74632 TTAACCACAC
Statistics
Matches: 116, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
156 27 0.23
157 12 0.10
158 57 0.49
159 20 0.17
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (159 bp):
TTTTGATAACCTCGATATGAAATTTTGATAACAACACTAAAAAATTTTGATAATCTACCTAAAAA
TTTTGATAATCCGATCACTATGAAATTTCGATAACCACCCCATGAAATTTGATAACCTTCTATCA
AATTTTGGTACTCCTTATGAAATTGAGAC
Found at i:74772 original size:24 final size:22
Alignment explanation
Indices: 74719--74775 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
74709 GACCACCACA
* *
74719 CTATGAAATGTCAATAACCTTC
1 CTATGAAATTTAAATAACCTTC
*
74741 CTAAGAAATTTAAATAACCTGATC
1 CTATGAAATTTAAATAACCT--TC
74765 CTATGAAATTT
1 CTATGAAATTT
74776 TGGTAACCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 17 0.59
24 12 0.41
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (22 bp):
CTATGAAATTTAAATAACCTTC
Found at i:74795 original size:68 final size:66
Alignment explanation
Indices: 74713--74855 Score: 155
Period size: 68 Copynumber: 2.1 Consensus size: 66
74703 AATTGTGACC
* *
74713 ACCACACTATGAAATGTCAATAACCTTCCTAA-GAAATTTAAATAACCTGATCC-TATGAAATTT
1 ACCACACTAAGAAATGTCAATAACCTTCC-AATGAAATTTAAATAA-CT--TCCATATAAAATTT
74776 TGGTA
62 TGGTA
* * ** * **
74781 ACCACATTAAGAAATTTTGATAACCTTCCAATTAAATTTTTATAACTTCCATATAAAATTTTGGT
1 ACCACACTAAGAAATGTCAATAACCTTCCAATGAAATTTAAATAACTTCCATATAAAATTTTGGT
74846 A
66 A
74847 ACCACACTA
1 ACCACACTA
74856 TGGAATTTTG
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
65 3 0.05
66 22 0.35
67 4 0.06
68 34 0.54
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.34
Consensus pattern (66 bp):
ACCACACTAAGAAATGTCAATAACCTTCCAATGAAATTTAAATAACTTCCATATAAAATTTTGGT
A
Found at i:74884 original size:22 final size:21
Alignment explanation
Indices: 74763--74911 Score: 93
Period size: 22 Copynumber: 6.8 Consensus size: 21
74753 AATAACCTGA
*
74763 TCCTATGAAATTTTGGTAACC
1 TCCTATGAAATTTTGATAACC
* * *
74784 ACATTAAGAAATTTTGATAACC
1 TC-CTATGAAATTTTGATAACC
* * * *
74806 TTCCAATTAAATTTTTATAACT
1 -TCCTATGAAATTTTGATAACC
* *
74828 TCCATATAAAATTTTGGTAACC
1 TCC-TATGAAATTTTGATAACC
* *
74850 ACACTATGGAATTTTGATAACC
1 TC-CTATGAAATTTTGATAACC
* *
74872 TCCTCATGAAATTATAATAACC
1 TCCT-ATGAAATTTTGATAACC
*
74894 AT-CTAATAAAATTTTGAT
1 -TCCT-ATGAAATTTTGAT
74912 TACCATACAG
Statistics
Matches: 94, Mismatches: 28, Indels: 11
0.71 0.21 0.08
Matches are distributed among these distances:
21 6 0.06
22 85 0.90
23 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (21 bp):
TCCTATGAAATTTTGATAACC
Found at i:74892 original size:66 final size:66
Alignment explanation
Indices: 74713--74909 Score: 177
Period size: 66 Copynumber: 3.0 Consensus size: 66
74703 AATTGTGACC
* * ** * *
74713 ACCACACTATGAAATGTCAATAACCTTCCTAA-GAAATT-TAAATAACCTGATCCTATGAAATTT
1 ACCACACTAAGAAATTTTGATAACCTTCC-AATGAAATTAT-AATAACC--ATCCAATAAAATTT
74776 TGGTA
62 TGGTA
* * * * *
74781 ACCACATTAAGAAATTTTGATAACCTTCCAATTAAATTTTTATAA-CTTCCATATAAAATTTTGG
1 ACCACACTAAGAAATTTTGATAACCTTCCAATGAAATTATAATAACCATCCA-ATAAAATTTTGG
74845 TA
65 TA
* * * *
74847 ACCACACTATGGAATTTTGATAACC-TCCTCATGAAATTATAATAACCATCTAATAAAATTTTG
1 ACCACACTAAGAAATTTTGATAACCTTCC-AATGAAATTATAATAACCATCCAATAAAATTTTG
74910 ATTACCATAC
Statistics
Matches: 105, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
65 6 0.06
66 58 0.55
67 7 0.07
68 33 0.31
69 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.35
Consensus pattern (66 bp):
ACCACACTAAGAAATTTTGATAACCTTCCAATGAAATTATAATAACCATCCAATAAAATTTTGGT
A
Found at i:75120 original size:20 final size:20
Alignment explanation
Indices: 75082--75120 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
75072 CTATTGACAT
75082 TAAAAAATTGAAATTAAAAG
1 TAAAAAATTGAAATTAAAAG
*
75102 TAAAATATT-AAATTCAAAA
1 TAAAAAATTGAAATT-AAAA
75121 AATAATAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (20 bp):
TAAAAAATTGAAATTAAAAG
Found at i:77427 original size:31 final size:29
Alignment explanation
Indices: 77338--77431 Score: 100
Period size: 29 Copynumber: 3.1 Consensus size: 29
77328 CGTCAGAAAA
77338 GGGCTTATTTGGCC-TTTTTAAAGAGTTCAG
1 GGGCTTATTTGGCCGTTTTT-AA-AGTTCAG
* ***
77368 GGGCTTATTTGGCTGCAATTAAAGTTCAG
1 GGGCTTATTTGGCCGTTTTTAAAGTTCAG
*
77397 GGGCTTATTTGGCCGTTTTGTGTAAGTTCAG
1 GGGCTTATTTGGCCGTTTT-T-AAAGTTCAG
77428 GGGC
1 GGGC
77432 CTTTTTGAGC
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
29 22 0.42
30 16 0.31
31 14 0.27
ACGTcount: A:0.18, C:0.14, G:0.31, T:0.37
Consensus pattern (29 bp):
GGGCTTATTTGGCCGTTTTTAAAGTTCAG
Found at i:79537 original size:113 final size:105
Alignment explanation
Indices: 79279--79547 Score: 344
Period size: 113 Copynumber: 2.5 Consensus size: 105
79269 AATTTTTCTA
* ** * *
79279 ACCCTTAAAATAAAATTTTAATTTTAATTT-TGGTTAAACTTAGTG-AATTAATTATATATTTTA
1 ACCCTTAAAATAAAAATAAAATTTTAATTTGAGGCTAAACTTAGTGAAATTAATTATATATTTTA
* *
79342 TTTCTAAAACCTTATAACAATATTATTAATTATGGAATTT
66 TTTCTAAAACCCTATAACAATATTATTAATTATGAAATTT
* * * *
79382 ACCCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTAGTTTTGTATTTTA
1 ACCCTTAAAATAAAAATAAAATTTTAATTTGAGGCTAAACTTAGTGAAATTAATTATATATTTTA
*
79447 TTTCTAAAACCCTATAACAATAGATTATTAATTTTGAAATTT
66 TTTCTAAAACCCTATAACAAT--ATTATTAATTATGAAATTT
79489 ACCCTTAAAATAAAAATAAAAATAAAATTTTAATTTGAGGCTAAACTTAGTGAAATTAA
1 ACCC-T----T-AAAATAAAAATAAAATTTTAATTTGAGGCTAAACTTAGTGAAATTAA
79548 GGCTAAACTT
Statistics
Matches: 143, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
103 27 0.19
104 13 0.09
105 35 0.24
107 21 0.15
108 1 0.01
112 1 0.01
113 45 0.31
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.41
Consensus pattern (105 bp):
ACCCTTAAAATAAAAATAAAATTTTAATTTGAGGCTAAACTTAGTGAAATTAATTATATATTTTA
TTTCTAAAACCCTATAACAATATTATTAATTATGAAATTT
Found at i:81986 original size:30 final size:30
Alignment explanation
Indices: 81930--81986 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
81920 ATATACAATC
* * *
81930 AGTCAGTCATTTCGGTTTGGCCAAAAAAAA
1 AGTCAATCATTTCGGTTAGGCAAAAAAAAA
*
81960 AGTCAATCATTTCGGTTAGGTAAAAAA
1 AGTCAATCATTTCGGTTAGGCAAAAAA
81987 TGCTAACTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (30 bp):
AGTCAATCATTTCGGTTAGGCAAAAAAAAA
Found at i:83969 original size:16 final size:16
Alignment explanation
Indices: 83948--83997 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
83938 AGTAAGCATG
83948 ATTTATATATTCTTTA
1 ATTTATATATTCTTTA
*
83964 ATTTATGA-AAT-TTTA
1 ATTTAT-ATATTCTTTA
* *
83979 ATTCATATGTTCTTTA
1 ATTTATATATTCTTTA
83995 ATT
1 ATT
83998 CATGAAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
14 1 0.04
15 10 0.37
16 15 0.56
17 1 0.04
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (16 bp):
ATTTATATATTCTTTA
Found at i:85671 original size:9 final size:9
Alignment explanation
Indices: 85657--85716 Score: 79
Period size: 9 Copynumber: 6.8 Consensus size: 9
85647 TTGAGACTGC
85657 AAAAAAAAT
1 AAAAAAAAT
85666 AAAAAAAAT
1 AAAAAAAAT
85675 AAAATAAAAT
1 AAAA-AAAAT
85685 -AAAAAAAT
1 AAAAAAAAT
*
85693 AATAAAAA-
1 AAAAAAAAT
*
85701 AAATAAAAT
1 AAAAAAAAT
85710 AAAAAAA
1 AAAAAAA
85717 CAGAGGAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
8 11 0.25
9 28 0.64
10 5 0.11
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:85678 original size:5 final size:5
Alignment explanation
Indices: 85657--85713 Score: 75
Period size: 5 Copynumber: 11.8 Consensus size: 5
85647 TTGAGACTGC
*
85657 AAAA- AAAAT AAAA- AAAAT AAAAT AAAAT AAAAA AATAAT AAAA- AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT AAAAT
85705 AAAAT AAAA
1 AAAAT AAAA
85714 AAACAGAGGA
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
4 12 0.26
5 31 0.66
6 4 0.09
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (5 bp):
AAAAT
Found at i:85697 original size:30 final size:29
Alignment explanation
Indices: 85657--85713 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 29
85647 TTGAGACTGC
85657 AAAAAAAATAAAAAAAATAAAATAAAATA
1 AAAAAAAATAAAAAAAATAAAATAAAATA
85686 AAAAAATAATAAAAAAAATAAAATAAAA
1 AAAAAA-AATAAAAAAAATAAAATAAAA
85714 AAACAGAGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
29 6 0.22
30 21 0.78
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (29 bp):
AAAAAAAATAAAAAAAATAAAATAAAATA
Found at i:86132 original size:2 final size:2
Alignment explanation
Indices: 86127--86153 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
86117 TATATATATA
86127 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
86154 ATTTCATTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:87032 original size:33 final size:33
Alignment explanation
Indices: 86995--87063 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
86985 TATGAGTCTC
*
86995 CAGATCTTTAGATCTTGGATGTTTGAGTTAGTT
1 CAGATCTTTAGATCTTGAATGTTTGAGTTAGTT
87028 CAGATCTTTAGATCTTGAATGTTTGAGTTAGTT
1 CAGATCTTTAGATCTTGAATGTTTGAGTTAGTT
87061 CAG
1 CAG
87064 TTTGTTGAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.23, C:0.10, G:0.23, T:0.43
Consensus pattern (33 bp):
CAGATCTTTAGATCTTGAATGTTTGAGTTAGTT
Found at i:95670 original size:14 final size:14
Alignment explanation
Indices: 95642--95675 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
95632 ACTTTTAGGC
95642 CTTTCTTTTCTTTT
1 CTTTCTTTTCTTTT
95656 CTTT-TTTTCTCTTT
1 CTTTCTTTTCT-TTT
95670 CTTTCT
1 CTTTCT
95676 ATACAATGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 6 0.33
14 11 0.61
15 1 0.06
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (14 bp):
CTTTCTTTTCTTTT
Found at i:102829 original size:30 final size:31
Alignment explanation
Indices: 102795--102854 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
102785 CTCTGGTCTG
*
102795 GCCAAGT-TGGCACCAACCTTCTGGAATAGT
1 GCCAAGTAAGGCACCAACCTTCTGGAATAGT
* *
102825 GCCAAGTGAAGGCATCAACTTTCTGGAATA
1 GCCAAGT-AAGGCACCAACCTTCTGGAATA
102855 TGGCACAGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 7 0.28
32 18 0.72
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (31 bp):
GCCAAGTAAGGCACCAACCTTCTGGAATAGT
Found at i:113198 original size:17 final size:15
Alignment explanation
Indices: 113178--113224 Score: 53
Period size: 14 Copynumber: 3.1 Consensus size: 15
113168 TTTACTTCTA
113178 ATAATTATTTTTAGATT
1 ATAA-TATTTTTA-ATT
*
113195 ATAATATATTTAATT
1 ATAATATTTTTAATT
113210 AT-ATATTTTT-ATT
1 ATAATATTTTTAATT
113223 AT
1 AT
113225 TTATAGTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 5 0.18
14 7 0.25
15 5 0.18
16 7 0.25
17 4 0.14
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (15 bp):
ATAATATTTTTAATT
Found at i:116313 original size:331 final size:328
Alignment explanation
Indices: 114268--116942 Score: 2303
Period size: 331 Copynumber: 8.1 Consensus size: 328
114258 TTTGGCATTA
* * * * * *
114268 CAGCCACATTGGATTTAAGAATTTGTTTTTACAAGCATATGAATTTTGTTTCGATTTAATTCGAA
1 CAGCCAAATT-GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* *
114333 ATTAATTCAGAAAAATATGAAAAACGAT-TAAAAAAGCGTGAAAAGTCCTCCAATCTTTTTGGCG
65 ATTAATTCAGAAAAATATGAAAAACGATAT-TAAAAGCGTGAAAAGTCCTTCAATCTTTTTGGCG
* * * * * *
114397 TTAAATTATATATA-TTTTATGAGTATTTTATCCAGAAATATG-GGAAAAATATTTCGGGTCATT
129 TTGAATTATATATATTTTTATGAGTATTTTAGCTAAAAAT-TGAGGAAAAATCTTTCGGGTCAAT
* * * *
114460 TTTTGCAAAGTTTTAGCCAAAATCGTGTACTAACCATCACAGTTTTTTTGGCTAAAAACGGGTTT
193 TTTTGCAAAATTTTAGCCGAAATCGTG-A-TAACCATCAC-G-GTTTTTGGCTAAAAACGCGTTT
* * * *
114525 CCGGGCCCCGGCTCAGTTTTTCATTGTTTTTGTCTTTTTGGCGCCGAGACTCCTTGAAATATCTA
254 -CGGGGCCCGGCTCAGTTTTGCA-------TG-ATTTTTGGTGCCGAGACTCCTTGAAATATCTA
* *
114590 AATTCATCTAATAAAATCT
310 TATTCATCTAATCAAATCT
* * * **
114609 TAGCCACATTGCATTTAAGGATTTGTTTTTACGAGTATCCAAATCTTGTTTCGATTTAATTAGAA
1 CAGCCAAATTG-ATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* ** * *
114674 ATTAATTCCGAAAAAATATGAAAAATTATATTAAAAGCGTGAAAAGCCCTTCAATCTTTTTGGCA
65 ATTAATTCAG-AAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATCTTTTTGGCG
* * *
114739 TTGAATTATATATATTTTTATGAGTATTAT-GACTAAAAATTGAGGAAATATCTTTTGGGTCAAT
129 TTGAATTATATATATTTTTATGAGTATTTTAG-CTAAAAATTGAGGAAAAATCTTTCGGGTCAAT
* * * * * *
114803 TTTTGCAAAATTTTAGCCGAAATCGTGTAATAATCATCATGTTTTTTAGCTAAAAACGTGTTCCG
193 TTTTGCAAAATTTTAGCCGAAATCGTG--ATAACCATCACGGTTTTTGGCTAAAAACGCGTTTCG
* * *
114868 GGGCCCGGTTCAATTTTGCATGATTTTTGGTGTCGAGACTCCTTGAAATATCTATATTCATCTAA
256 GGGCCCGGCTCAGTTTTGCATGATTTTTGGTGCCGAGACTCCTTGAAATATCTATATTCATCTAA
*
114933 CCAAA--T
321 TCAAATCT
** * ** * * * *
114939 C--CC-AA-CCA-TT----A----TTTTTACAAATATCTGAATCATGTTTCGTTTTTATTAGGAA
1 CAGCCAAATTGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
* * * * * *
114991 TTAATTCGGAAAAAAATAGGAAAAATGATATTAGAAGCGTGAAAAGTCCTTCAATTTTTTTGGCA
66 TTAATTC--AGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATCTTTTTGGCG
* * ** * *
115056 TTGAATTATATATTTTTTTATGAGT-TTTGTGGCTAAAAATT-AATAGAATAT-TTATCTGGTCA
129 TTGAATTATATATATTTTTATGAGTATTT-TAGCTAAAAATTGAGGA-AAAATCTT-TCGGGTCA
* * * * * * * *
115118 TTTTTTGCAAAATTTTAGCAGGAATCGTATACTAACCATTACGGTTTTTTGCTAAAAAAGAGTTT
191 ATTTTTGCAAAATTTTAGCCGAAATCGT-GA-TAACCATCACGGTTTTTGGCTAAAAACGCGTTT
* * * * * *
115183 TGAGACCCAGCTCAGTTTTGCATGATTTTTGGCGTCGAGACGT--TTCGAAATAT-T-TA-T-A-
254 CGGGGCCCGGCTCAGTTTTGCATGATTTTTGGTGCCGAGAC-TCCTT-GAAATATCTATATTCAT
115241 -T--T-AAATCT
317 CTAATCAAATCT
* *
115249 CAGCCAAATTGCATTTAAGGA-TTGTTTTTACGAGAATCTGAATCTTGATTCGATTTAATTAGAA
1 CAGCCAAATTG-ATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* * *
115313 ATTAATTCAGAAAAATATGAAAAACAATATTAAAAGCGAGAAAAGTCCTTCAATCTTTTTGGAGT
65 ATTAATTCAGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATCTTTTTGGCGT
* * * **
115378 TGAATTATATATA-TTTTATGAGTATTTTAGAC-AAAAATTTAGCAAAAATATTTTTGGTCAA-T
130 TGAATTATATATATTTTTATGAGTATTTTAG-CTAAAAATTGAGGAAAAATCTTTCGGGTCAATT
* ** ** * * *
115440 TTTGTCAAAA--TAAAACG-TGTACGTTAGTCGAA--ATCATGGTTTTTGGCTAAAAACGCGTTA
194 TTTG-CAAAATTTTAGCCGAAAT-CGTGA-T--AACCATCACGGTTTTTGGCTAAAAACGCGTTT
* * * * ** *
115500 CGGGGCCCGGTTCAGTGTTGCATAATTTTTTGCACCGAGACTCCTTGCAATATCT-TCATTCATC
254 CGGGGCCCGGCTCAGTTTTGCATGATTTTTGGTGCCGAGACTCCTTGAAATATCTAT-ATTCATC
*
115564 TAACCAAATCT
318 TAATCAAATCT
* * * * *** *
115575 CAGTCACATTGGACTTAAGAATTTG-TAAAACAAGCATCTGAATCATCGAATCATGTTTCGATTT
1 CAGCCAAATT-GATTTAAGGATTTGTTTTTACGAGCATCTG-A--ATC---T--TGTTTCGATTT
* * * * **
115639 AATTAAAAATTAATT-TGAAAAATAATAGGAAAAACGATATTAGAAGCATGAAAAACCCTTCAAT
57 AATTAGAAATTAATTCAGAAAAAT-AT--GAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAAT
* * * * * * *
115703 CTTTTTGGCGTTGAATTATACA-ACTTTTAT-AGGCATTGTGGATAAAAATTGAGGAAATATCTT
119 CTTTTTGGCGTTGAATTATATATATTTTTATGA-GTATTTTAGCTAAAAATTGAGGAAAAATCTT
* *
115766 TCGAGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAATCATCACGGTTTTTGGCTAAAA
183 TCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTG--ATAACCATCACGGTTTTTGGCTAAAA
* * ** * * * *
115831 ACGCG-TTCTGGGGCCCTGGCTAAGTTTTGCATGGTTTTTCATGCCAAGACTCTTTGAGATATCC
246 ACGCGTTTC-GGGGCCC-GGCTCAGTTTTGCATGATTTTTGGTGCCGAGACTCCTTGAAATATCT
* **
115895 ATATTCATTTAATTTAATCT
309 ATATTCATCTAATCAAATCT
* * * * * *
115915 CAGCTACATTTGGATTGAAGAATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAACTAGA
1 CAGCCA-AATT-GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGA
* *
115980 AATTAATTCAGAAAAATATGAAAAATC-ATATTAAAAGCGT-AAAAGTCCTCCAATCTTTTTTGT
64 AATTAATTCAGAAAAATATGAAAAA-CGATATTAAAAGCGTGAAAAGTCCTTCAATC-TTTTTGG
* *
116043 CGTTAAATTATATATATATATATTATGAGTATTTTAGCTAAAAATTGAATGAAAAATCTTTCGGG
127 CGTTGAATTATATATAT-T-T-TTATGAGTATTTTAGCTAAAAATTG-AGGAAAAATCTTTCGGG
* ** * * * *
116108 TCATTTTTTATAAAATTTTAGCCGGAATCGTG-TAACCATCACGATTTTTGGCTAAAAATGCATT
188 TCAATTTTTGCAAAATTTTAGCCGAAATCGTGATAACCATCACGGTTTTTGGCTAAAAACGCGTT
* ** * *
116172 TCAGGGCCCAACTCAGTTTTGAATGATTTTTGGTGCCGAGACTCCTTCAAATATCTATATTCATC
253 TCGGGGCCCGGCTCAGTTTTGCATGATTTTTGGTGCCGAGACTCCTTGAAATATCTATATTCATC
*
116237 TAATCAAGTCT
318 TAATCAAATCT
* *
116248 CAGCCAAATTGATTTTAAGGACTTGTTTTTACGAGCATCTGAA-CTTGTTTTGATTTAATTAGAA
1 CAGCCAAATTGA-TTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* * * * * *
116312 ATTAATTCAAAAAAATATGAAGAACGATATTAAAAACGTGAAAAGGCTTTCAAT-TGTTTTGGCA
65 ATTAATTCAGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATCT-TTTTGGCG
* * ** *
116376 TTGAATTATATAT-TTTTTATGATTATTTTCGCTAAAAATCAAGGAAAAATCTTTCGAGTCAATT
129 TTGAATTATATATATTTTTATGAGTATTTTAGCTAAAAATTGAGGAAAAATCTTTCGGGTCAATT
* * * * * * * *
116440 TTTGCAAAATTTTAGCCTAAATCATATACTAACCATCACGGTTTTAGACTAAAACCGCGTTCCAG
194 TTTGCAAAATTTTAGCCGAAATCGT-GA-TAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGG
* * * * * *
116505 GACCCGTCTCAGTTTTGCATGATTTTTTGTTCCAAGACTCCTTGAAATATCTATATTCATCTAAC
257 GGCCCGGCTCAGTTTTGCATGATTTTTGGTGCCGAGACTCCTTGAAATATCTATATTCATCTAAT
116570 CAAATCT
322 CAAATCT
* * *
116577 CAGCCACATTAGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTGGAA
1 CAGCCAAATT-GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* * * * * * * **
116642 ATTAATTTGAAAAAAATAGGAAAAACAATATTAGAAGCGTTAAAAGCCCTTCAATCTTTTTGATG
65 ATTAA-TTCAGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATCTTTTTGGCG
* * * * *
116707 TCGAATTATATAT-TTTTTATGAGTATTTTTGCCAAAAATTGAGGAAATATCTTTCGGATCAATT
129 TTGAATTATATATATTTTTATGAGTATTTTAGCTAAAAATTGAGGAAAAATCTTTCGGGTCAATT
* * *
116771 TTTGCAAAATTTTAGCCGAAATCGTGTACTAACTATCACGGTTTTTGGCTAAAAACGCATTCCGG
194 TTTGCAAAATTTTAGCCGAAATCGTG-A-TAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGG
* * * * * *
116836 GTCCCCAGCTCTGTTTTGCATAATTTTTGGTGCCGAGACCCCTTAAAATATCTATATT-ATCTAA
257 G-GCCCGGCTCAGTTTTGCATGATTTTTGGTGCCGAGACTCCTTGAAATATCTATATTCATCTAA
116900 TCAAATCT
321 TCAAATCT
* * * *
116908 CAGGCATATTCTACTTAAGGATTTGTTTTTACGAG
1 CAGCCAAATT-GATTTAAGGATTTGTTTTTACGAG
116943 AATTTAA
Statistics
Matches: 1881, Mismatches: 350, Indels: 216
0.77 0.14 0.09
Matches are distributed among these distances:
308 3 0.00
310 2 0.00
311 1 0.00
312 2 0.00
313 3 0.00
314 1 0.00
315 3 0.00
316 53 0.03
317 248 0.13
318 12 0.01
319 8 0.00
320 38 0.02
321 69 0.04
323 41 0.02
324 2 0.00
325 1 0.00
326 71 0.04
327 27 0.01
328 3 0.00
329 132 0.07
330 30 0.02
331 283 0.15
332 165 0.09
333 67 0.04
334 85 0.05
335 13 0.01
336 109 0.06
337 50 0.03
338 9 0.00
339 36 0.02
340 71 0.04
341 98 0.05
342 73 0.04
343 71 0.04
344 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.37
Consensus pattern (328 bp):
CAGCCAAATTGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
TTAATTCAGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATCTTTTTGGCGTT
GAATTATATATATTTTTATGAGTATTTTAGCTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTT
TGCAAAATTTTAGCCGAAATCGTGATAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCC
CGGCTCAGTTTTGCATGATTTTTGGTGCCGAGACTCCTTGAAATATCTATATTCATCTAATCAAA
TCT
Done.