genome.fa.s19396.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019396.1 Corchorus olitorius cultivar O-4 contig19429, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79789

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3467--3550	27	3.1	27	94	1	141	50	15	4	29	1.65
3925--3962	11	3.5	11	85	10	51	57	2	0	39	1.12
6947--8896	331	5.9	330	79	5	1801	37	16	14	32	1.88
6947--8896	334	5.9	327	78	6	1768	37	16	14	32	1.88
8618--9182	288	2.0	289	84	5	750	37	17	13	32	1.88
8897--9526	317	2.0	316	83	4	784	36	16	13	32	1.89
9026--10248	613	2.0	603	84	4	1573	36	17	14	31	1.90
9655--10770	329	3.4	324	81	8	1161	34	17	14	33	1.90
11089--11171	22	3.8	21	73	17	64	57	1	2	38	1.19
11091--11139	25	2.0	25	84	8	64	59	0	0	40	0.98
11365--11981	331	1.9	329	82	4	785	35	16	13	34	1.88
20437--20476	2	19.5	2	94	5	71	47	2	0	50	1.14
22295--22336	22	1.9	22	95	0	75	52	4	7	35	1.50
23393--23537	48	3.0	47	79	12	163	50	5	17	26	1.68
30217--30270	28	2.0	27	85	3	72	46	1	38	12	1.53
30366--30422	30	1.9	30	92	3	98	47	1	14	36	1.54
33406--33436	11	2.8	11	90	0	53	3	19	41	35	1.67
40902--40983	20	3.7	23	68	26	59	42	1	2	53	1.21
40904--40969	20	3.2	20	75	21	64	39	1	3	56	1.24
50075--50100	13	2.0	13	100	0	52	46	0	15	38	1.46
52820--52896	29	2.5	31	81	10	97	28	12	28	29	1.94
53587--53642	9	6.2	9	80	12	62	85	12	1	0	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53581--53642	15	4.2	14	85	6	79	83	12	3	0	0.75
53586--53642	21	2.8	21	86	5	82	85	12	1	0	0.66
53642--53666	2	12.5	2	100	0	50	52	48	0	0	1.00
60409--60449	21	2.0	21	85	9	57	53	7	14	24	1.66
60493--60528	14	2.6	14	91	4	56	0	19	0	80	0.71
76537--76661	60	2.1	61	89	1	189	36	23	22	18	1.95
76532--76651	30	4.0	30	88	1	168	35	23	22	18	1.95
77485--77513	2	14.5	2	100	0	58	48	0	0	51	1.00

Tables:   1

The End!