Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019399.1 Corchorus olitorius cultivar O-4 contig19432, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18993

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
464--1669
323
3.7
318
75
11
1053
36
15
14
33
1.88
2025--3066
548
1.9
545
83
5
1359
35
16
14
34
1.88
4326--5138
323
2.5
322
80
7
888
36
14
14
34
1.87
4856--6248
561
2.5
559
91
3
2215
37
16
13
32
1.88
8860--9238
192
2.0
192
89
3
584
36
18
15
29
1.92
9793--10016
7
32.3
7
85
8
298
14
0
41
44
1.45
9793--10016
20
10.8
21
84
8
298
14
0
41
44
1.45
10039--10727
319
2.1
321
81
4
809
35
15
15
33
1.90
10798--11601
317
2.5
319
81
6
838
36
16
14
33
1.88
10018--13924
870
4.5
876
86
5
5032
36
15
14
33
1.88
13352--16486
332
9.5
331
77
8
2635
36
14
14
34
1.87
16798--16839
13
3.2
13
74
12
50
38
9
2
50
1.48
18383--18414
16
2.0
16
100
0
64
50
12
0
37
1.41
18772--18818
22
2.1
22
84
0
58
19
23
23
34
1.97
18869--18893
13
1.9
13
100
0
50
24
20
24
32
1.98

Tables:   1

The End!