Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019400.1 Corchorus olitorius cultivar O-4 contig19433, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53701

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35--65
13
2.4
13
94
0
53
41
22
12
22
1.88
6873--6907
18
2.0
17
88
5
52
11
25
2
60
1.45
9366--9392
12
2.2
12
100
0
54
77
7
14
0
0.97
10687--10711
13
1.9
13
100
0
50
0
20
0
80
0.72
19424--19806
97
4.0
97
93
1
662
39
17
8
34
1.79
19424--19806
192
2.0
193
95
1
687
39
17
8
34
1.79
21439--21479
2
20.5
2
85
9
57
46
2
2
48
1.28
23993--24017
9
2.8
9
100
0
50
0
24
44
32
1.54
29342--29370
13
2.2
13
100
0
58
31
44
17
6
1.75
30396--30486
45
2.0
45
97
0
173
47
12
13
27
1.78
36272--36351
29
2.7
30
84
3
99
28
17
13
40
1.88
36477--36574
31
3.1
31
89
2
133
40
8
14
36
1.75
37615--37711
31
3.1
31
95
1
167
31
14
11
42
1.81
37835--37914
29
2.7
29
90
3
115
41
12
17
28
1.86
42703--42748
18
2.6
18
86
6
58
13
6
17
63
1.50
44659--44683
3
8.3
3
100
0
50
68
0
0
32
0.90
45387--45421
18
1.9
18
88
11
54
65
0
5
28
1.15
45765--45924
60
2.7
60
82
6
198
37
14
18
30
1.90
45824--45925
31
3.4
31
66
10
84
38
17
17
26
1.92
46288--46448
60
2.7
61
85
4
220
38
13
17
31
1.88
46408--46468
28
2.1
30
84
9
81
40
18
18
22
1.91
45516--46563
524
2.0
523
97
0
1979
33
20
18
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46488--46629
60
2.4
60
87
0
194
27
18
16
37
1.92
46492--46661
60
2.8
60
83
4
193
29
18
15
37
1.91
47892--47928
19
2.0
19
94
5
67
32
0
0
67
0.91
47898--47939
19
2.2
19
86
0
57
38
2
0
59
1.10
50939--50965
1
27.0
1
100
0
54
0
0
0
100
0.00

Tables:   1

The End!