Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019401.1 Corchorus olitorius cultivar O-4 contig19434, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52424

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7812--7838
2
13.5
2
100
0
54
51
0
0
48
1.00
7840--7866
2
13.5
2
100
0
54
51
48
0
0
1.00
12443--12545
36
2.9
36
81
5
127
33
20
13
33
1.91
13785--13831
23
2.0
23
100
0
94
21
34
12
31
1.91
18362--18408
23
2.0
23
95
0
85
44
12
4
38
1.62
19428--21371
330
5.9
326
81
5
1853
37
16
14
31
1.88
19451--21369
662
2.9
652
81
6
2057
37
16
14
31
1.88
27342--27372
15
2.0
16
93
6
55
32
32
6
29
1.83
27938--27963
3
8.7
3
100
0
52
0
30
0
69
0.89
32904--32940
19
1.9
19
88
0
56
35
13
21
29
1.92
34371--34446
29
2.6
29
85
2
107
19
22
17
40
1.91
34533--34610
32
2.5
30
78
15
95
37
17
25
19
1.94
35615--35645
14
2.3
13
94
5
53
61
0
3
35
1.12
42373--42401
5
5.8
5
100
0
58
20
0
0
79
0.74
43613--43664
24
2.2
24
93
6
88
44
7
15
32
1.75
43527--43787
134
2.0
133
96
0
486
39
13
16
31
1.86
43900--43957
21
2.8
21
77
10
66
50
8
34
6
1.60
44510--44550
21
2.0
21
95
0
73
29
19
41
9
1.83
45815--45870
21
2.7
21
82
0
67
55
10
30
3
1.51

Tables:   1

The End!