Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019405.1 Corchorus olitorius cultivar O-4 contig19438, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8020
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33


Found at i:6527 original size:13 final size:13

Alignment explanation


    Indices: 6494--6520  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       6484 CTGCATAAAA

                         
       6494 TAATTAATAGTAT
          1 TAATTAATAGTAT

                         
       6507 TAATTAATAGTAT
          1 TAATTAATAGTAT

             
       6520 T
          1 T

       6521 GCATAATTAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48


Consensus pattern (13 bp):   
TAATTAATAGTAT

Found at i:7601 original size:20 final size:20

Alignment explanation


    Indices: 7562--7601  Score: 53
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       7552 TAACTTTGGT

                *          *    
       7562 ATTATCAATATAAATTAACA
          1 ATTAACAATATAAATAAACA

                       *        
       7582 ATTAACAATATTAATAAACA
          1 ATTAACAATATAAATAAACA

       7602 CCAAAATATT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33


Consensus pattern (20 bp):   
ATTAACAATATAAATAAACA
Done.