Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019408.1 Corchorus olitorius cultivar O-4 contig19441, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40441

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--2407
320
7.4
322
76
11
1486
36
15
14
33
1.88
5--2100
650
3.2
648
78
10
1949
36
15
14
33
1.88
3195--3268
31
2.4
31
95
2
132
39
9
17
33
1.82
4228--4301
31
2.4
31
88
2
105
29
16
12
41
1.84
4434--4513
29
2.7
29
84
3
88
38
13
17
30
1.88
6279--6305
1
27.0
1
100
0
54
0
0
0
100
0.00
7594--9529
331
5.9
329
79
6
1842
36
15
15
33
1.89
11704--11772
34
2.0
34
100
0
138
43
27
11
17
1.83
12722--12751
11
2.8
11
95
5
53
56
10
10
23
1.62
18781--18944
60
2.7
59
89
3
249
36
19
17
26
1.94
18773--18944
31
5.7
30
76
14
158
37
19
16
26
1.93
22803--22881
31
2.6
30
79
16
90
40
22
8
27
1.84
37737--37828
39
2.4
39
98
0
175
27
10
17
44
1.82
37820--37882
33
2.0
33
84
6
85
17
19
28
34
1.94

Tables:   1

The End!