Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001941.1 Corchorus olitorius cultivar O-4 contig01941, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 883

Length: 1473
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27


Found at i:1305 original size:22 final size:22

Alignment explanation


    Indices: 1277--1320  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1267 ATGAATCGGC

                                  
       1277 ACTCTATTAAGGTTTGTGTTCA
          1 ACTCTATTAAGGTTTGTGTTCA

                                  
       1299 ACTCTATTAAGGTTTGTGTTCA
          1 ACTCTATTAAGGTTTGTGTTCA

       1321 GTCGATCTTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.23, C:0.14, G:0.18, T:0.45


Consensus pattern (22 bp):   
ACTCTATTAAGGTTTGTGTTCA
Done.