Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019412.1 Corchorus olitorius cultivar O-4 contig19445, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3308
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32


Found at i:1687 original size:18 final size:18

Alignment explanation


    Indices: 1664--1702  Score: 78
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       1654 CATTAGTGGT

                              
       1664 TCAAATATTCTTCTCCAA
          1 TCAAATATTCTTCTCCAA

                              
       1682 TCAAATATTCTTCTCCAA
          1 TCAAATATTCTTCTCCAA

               
       1700 TCA
          1 TCA

       1703 CTTGAAGGAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.33, C:0.28, G:0.00, T:0.38


Consensus pattern (18 bp):   
TCAAATATTCTTCTCCAA
Done.