Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019414.1 Corchorus olitorius cultivar O-4 contig19447, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55015

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2571--2600
12
2.4
13
94
5
53
20
13
3
63
1.43
3713--3737
2
12.5
2
100
0
50
48
0
0
52
1.00
3843--3875
5
6.8
5
96
3
59
42
0
15
42
1.46
11142--11177
18
2.0
18
100
0
72
72
11
16
0
1.12
12992--13330
170
2.0
170
95
1
617
41
20
10
26
1.86
22641--22678
8
4.8
8
96
0
58
21
10
0
68
1.19
23932--23971
19
2.2
19
90
4
64
37
20
2
40
1.66
24677--24710
5
6.8
5
100
0
68
41
20
0
38
1.53
48222--48249
6
4.7
6
100
0
56
14
50
17
17
1.79
51127--51160
6
5.7
6
85
0
50
17
61
20
0
1.34
54240--54270
15
2.1
15
100
0
62
32
25
12
29
1.93

Tables:   1

The End!