genome.fa.s19415.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019415.1 Corchorus olitorius cultivar O-4 contig19448, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115215

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9051--9075	4	6.2	4	100	0	50	76	0	0	24	0.80
10081--10480	198	2.0	198	100	0	800	29	26	13	30	1.93
22343--22373	2	15.5	2	100	0	62	48	0	0	51	1.00
26610--26699	45	2.0	44	93	2	153	45	21	20	13	1.84
26997--27021	12	2.1	12	100	0	50	8	0	0	92	0.40
29122--29370	63	4.0	63	97	0	471	31	16	32	19	1.94
31293--31709	75	5.5	74	85	6	475	31	28	17	21	1.97
31300--31709	150	2.7	149	87	3	536	31	28	18	21	1.97
35532--35564	17	1.9	17	93	0	57	21	6	6	66	1.35
37478--37538	11	5.2	12	79	16	58	39	1	3	55	1.26
41458--41496	18	2.2	18	85	0	51	2	7	10	79	1.02
42093--42164	34	2.1	36	92	5	121	16	13	15	54	1.72
43268--43328	32	1.9	32	86	6	88	47	4	3	44	1.41
43970--44011	2	21.0	2	100	0	84	50	0	0	50	1.00
45039--45081	2	21.5	2	100	0	86	51	0	0	48	1.00
49106--49144	20	2.0	19	95	5	69	56	10	5	28	1.54
49794--49838	2	22.5	2	100	0	90	48	0	0	51	1.00
53163--53311	48	3.1	48	98	0	280	30	29	20	18	1.97
58673--58710	13	3.0	13	80	3	51	0	10	0	89	0.49
59404--59446	22	2.0	22	90	0	68	0	11	18	69	1.17
61379--61434	29	1.9	29	85	0	76	28	8	25	37	1.86
73633--73690	26	2.2	26	87	0	80	31	13	37	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82282--82526	123	2.0	123	88	3	368	32	14	20	32	1.92
87009--87034	3	8.7	3	100	0	52	34	0	30	34	1.58
87777--87872	50	1.9	49	95	2	174	52	13	9	25	1.70
89580--89617	2	19.0	2	100	0	76	50	0	0	50	1.00
91694--91739	22	2.1	21	84	4	56	50	6	0	43	1.28
93686--94140	196	2.3	196	90	2	705	29	17	20	33	1.95
101721--101921	54	3.6	54	94	2	330	3	25	12	58	1.50
101766--101850	27	3.1	27	63	24	70	3	28	12	55	1.54
101721--101921	110	1.8	109	91	4	332	3	25	12	58	1.50
102434--102480	18	2.6	18	82	0	58	31	31	8	27	1.87
102393--102663	99	2.7	101	93	1	456	33	26	16	23	1.95
102574--102747	84	2.1	84	97	0	330	35	27	14	22	1.94
102452--102857	183	2.2	187	90	4	622	35	26	14	23	1.93
102719--102765	18	2.6	18	86	0	58	36	29	4	29	1.77
102732--102766	18	1.9	18	94	0	61	40	25	5	28	1.78
102666--102883	110	2.0	110	98	0	418	37	26	12	22	1.91
102829--102876	18	2.7	18	86	0	69	35	33	4	27	1.76
102860--102901	21	2.0	21	90	0	66	40	26	4	28	1.76
103347--103454	53	2.0	53	94	0	189	26	11	23	38	1.88
104429--104505	38	2.0	38	82	0	91	23	3	19	53	1.62
106477--108850	323	7.2	318	71	14	1466	33	14	16	35	1.89
106872--108933	683	3.1	682	77	11	1902	32	14	16	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106475--108861	654	3.6	650	83	7	3011	33	14	16	35	1.89
110950--111018	30	2.3	31	85	7	106	8	7	31	52	1.60
110963--111012	15	3.3	15	71	0	55	12	6	32	50	1.64
112449--112487	18	2.2	18	100	0	78	25	5	5	64	1.35
112623--112834	107	2.0	107	90	0	334	30	22	24	22	1.99
113038--113099	31	2.0	31	93	0	106	41	6	19	32	1.77

Tables:   1

The End!