Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019418.1 Corchorus olitorius cultivar O-4 contig19451, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76097

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
629--759
51
2.6
51
90
0
199
38
12
23
24
1.90
5596--5633
19
2.0
19
100
0
76
10
21
31
36
1.87
8150--8180
15
2.1
15
93
0
53
16
35
9
38
1.81
31571--31660
30
3.0
30
81
0
117
20
16
21
42
1.89
35268--35322
26
2.2
26
86
3
76
47
3
7
41
1.49
35268--35447
96
1.9
97
88
2
245
51
4
10
34
1.56
41910--41956
24
2.0
24
82
0
58
51
21
10
17
1.75
48464--48556
46
2.0
46
97
0
177
32
21
13
32
1.93
54954--56597
331
5.0
328
80
6
1757
36
15
14
33
1.89
56624--58629
653
3.1
657
78
8
1601
36
15
14
33
1.88
56594--58629
330
6.2
329
77
8
1668
36
15
14
33
1.88
58972--59001
15
1.9
16
93
6
53
53
3
0
43
1.17
61670--61701
12
2.7
12
100
0
64
34
6
9
50
1.60
62938--62996
17
3.6
15
74
17
55
45
0
44
10
1.37
63192--63278
41
2.1
41
85
4
113
28
9
21
40
1.84

Tables:   1

The End!