Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019420.1 Corchorus olitorius cultivar O-4 contig19453, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1917
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.32


Found at i:1138 original size:44 final size:44

Alignment explanation


    Indices: 1075--1162  Score: 158
    Period size: 44  Copynumber: 2.0  Consensus size: 44

       1065 CATAATACTC

                                             *  *       
       1075 ATAAAAAATATATAATTCAACGCCAAAAAGATTGAATGGCTTTT
          1 ATAAAAAATATATAATTCAACGCCAAAAAGATTCAACGGCTTTT

                                                        
       1119 ATAAAAAATATATAATTCAACGCCAAAAAGATTCAACGGCTTTT
          1 ATAAAAAATATATAATTCAACGCCAAAAAGATTCAACGGCTTTT

       1163 CACGCTTTGA


Statistics
Matches: 42,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  44   42  1.00

ACGTcount: A:0.48, C:0.14, G:0.10, T:0.28


Consensus pattern (44 bp):   
ATAAAAAATATATAATTCAACGCCAAAAAGATTCAACGGCTTTT
Done.