Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019422.1 Corchorus olitorius cultivar O-4 contig19455, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87666

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12--1061
320
3.2
319
81
6
1116
35
15
15
32
1.90
2163--2192
14
2.1
14
93
0
51
23
10
6
60
1.52
2418--2447
14
2.1
14
100
0
60
20
13
6
60
1.55
2073--2580
255
2.0
245
93
3
854
28
11
16
43
1.83
6916--6967
8
6.2
8
93
6
86
51
0
23
25
1.48
6919--7045
24
5.0
26
72
13
88
54
0
16
29
1.43
6919--7045
5
28.2
5
67
25
52
54
0
16
29
1.43
6974--7002
11
2.7
11
94
5
51
62
0
0
37
0.96
15156--15185
6
4.8
6
95
4
51
36
13
0
50
1.42
15292--15695
141
2.8
141
90
5
625
36
8
6
49
1.59
15292--15695
145
2.8
144
91
3
631
36
8
6
49
1.59
15563--15785
115
1.9
114
88
4
333
36
10
4
48
1.56
15757--15804
15
2.9
16
84
12
53
41
4
2
52
1.32
15754--15804
18
2.8
17
85
8
57
41
3
1
52
1.31
17130--17171
22
1.9
22
85
0
57
40
11
4
42
1.63
20426--20452
2
13.5
2
100
0
54
48
0
0
51
1.00
20628--20691
32
2.0
32
90
0
101
39
6
4
50
1.49
21192--21227
8
4.5
8
100
0
72
27
11
47
13
1.77
21806--22062
130
2.0
128
84
6
315
31
18
20
29
1.97
27119--27219
45
2.2
45
100
0
202
43
26
7
21
1.80
29593--29630
20
1.9
20
100
0
76
63
10
10
15
1.52
29681--29777
48
2.0
48
95
0
176
40
9
24
25
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32094--32256
54
3.0
54
97
0
308
34
26
15
22
1.95
33423--33466
22
2.0
22
90
0
70
22
31
15
29
1.95
34686--34727
20
2.1
20
100
0
84
42
14
23
19
1.87
36871--36916
23
2.0
23
91
0
74
32
23
4
39
1.75
37090--37262
39
4.4
39
97
0
301
13
31
8
46
1.73
47863--47922
23
2.6
23
89
5
86
48
0
0
51
1.00
50589--50903
159
2.0
161
90
3
503
33
17
18
30
1.94
57357--57472
22
5.3
22
98
0
223
4
27
45
22
1.71
59533--59717
60
3.1
60
86
2
237
37
12
15
33
1.86
63633--63670
11
3.7
10
89
6
51
39
0
2
57
1.12
63633--63675
5
8.4
5
80
14
52
39
0
2
58
1.11
63640--63675
14
2.5
15
91
8
58
38
0
0
61
0.96
63914--63951
19
2.0
19
94
0
67
55
5
18
21
1.62
64245--64315
36
2.0
36
88
0
106
40
8
16
33
1.79
67767--67802
6
6.0
6
93
0
63
33
19
33
13
1.91
71959--72076
39
3.2
39
62
24
99
36
33
14
16
1.89
71956--72102
73
2.0
73
100
0
294
34
33
14
17
1.91
84744--84816
30
2.4
30
81
4
85
23
19
15
42
1.88

Tables:   1

The End!